New functions of small nucleolar RNAs

Mis-targeted methylation in rRNA can severely impair ribosome synthesis and activity

(2014) Ben Liu et al.   RNA Biology

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Small nucleolar RNA expression profiling identifies potential prognostic markers in peripheral T-cell lymphoma

(2012) W. Valleron et al.   BLOOD

A new PICTure of nucleolar stress

(2012) Akira Suzuki et al.   CANCER SCIENCE

Noncoding RNA Expression in Myocardium From Infants With Tetralogy of Fallot

(2012) James E. O'Brien et al.   Circulation-Cardiovascular Genetics

Intracellular Localization and Routing of miRNA and RNAi Pathway Components

(2012) Thomas Ohrt et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway

(2012) Francisco Esteban Nicolas et al.   FEBS LETTERS

Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs

(2012) B. E. Jady et al.   GENES & DEVELOPMENT

Prader-Willi syndrome

(2012) Suzanne B. Cassidy et al.   GENETICS IN MEDICINE

Genomic analysis of high-risk smoldering multiple myeloma

(2012) L. Lopez-Corral et al.   HAEMATOLOGICA

Multiple myeloma–associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress

(2012) Liang Chu et al.   JOURNAL OF CLINICAL INVESTIGATION

Specific small nucleolar RNA expression profiles in acute leukemia

(2012) W Valleron et al.   LEUKEMIA

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

(2012) Sara Macias et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC

(2012) Marc R Fabian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs

(2012) M.-L. Bortolin-Cavaille et al.   NUCLEIC ACIDS RESEARCH

Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation

(2012) Konstantinia Skreka et al.   NUCLEIC ACIDS RESEARCH

Zebrafish Models for Dyskeratosis Congenita Reveal Critical Roles of p53 Activation Contributing to Hematopoietic Defects through RNA Processing

(2012) Ying Zhang et al.   PLoS One

Differential Gene Expression in Tamoxifen-Resistant Breast Cancer Cells Revealed by a New Analytical Model of RNA-Seq Data

(2012) Kathryn J. Huber-Keener et al.   PLoS One

Dyskerin Overexpression in Human Hepatocellular Carcinoma Is Associated with Advanced Clinical Stage and Poor Patient Prognosis

(2012) Bei Liu et al.   PLoS One

Dicer-Dependent Biogenesis of Small RNAs Derived from 7SL RNA

(2012) Yong-Feng Ren et al.   PLoS One

CpG island hypermethylation-associated silencing of small nucleolar RNAs in human cancer

(2012) Humberto J. Ferreira et al.   RNA Biology

The genetics of dyskeratosis congenita

(2012) Philip J. Mason et al.   Cancer Genetics

Small RNAs derived from longer non-coding RNAs

(2011) Susanne Röther et al.   BIOCHIMIE

Mirtrons: microRNA biogenesis via splicing

(2011) Jakub O. Westholm et al.   BIOCHIMIE

A zebrafish model of dyskeratosis congenita reveals hematopoietic stem cell formation failure resulting from ribosomal protein-mediated p53 stabilization

(2011) T. C. Pereboom et al.   BLOOD

The small-nucleolar RNAs commonly used for microRNA normalisation correlate with tumour pathology and prognosis

(2011) H E Gee et al.   BRITISH JOURNAL OF CANCER

Small Nucleolar RNAs U32a, U33, and U35a Are Critical Mediators of Metabolic Stress

(2011) Carlos I. Michel et al.   Cell Metabolism

Passing the anaerobic threshold is associated with substantial changes in the gene expression profile in white blood cells

(2011) Dmitry A. Sakharov et al.   EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY

Requirement of rRNA Methylation for 80S Ribosome Assembly on a Cohort of Cellular Internal Ribosome Entry Sites

(2011) A. Basu et al.   MOLECULAR AND CELLULAR BIOLOGY

Dyskeratosis congenita as a disorder of telomere maintenance

(2011) Nya D. Nelson et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Converting nonsense codons into sense codons by targeted pseudouridylation

(2011) John Karijolich et al.   NATURE

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration

(2011) Hiroki Kaneko et al.   NATURE

PIWI-interacting small RNAs: the vanguard of genome defence

(2011) Mikiko C. Siomi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Human box C/D snoRNA processing conservation across multiple cell types

(2011) Michelle S. Scott et al.   NUCLEIC ACIDS RESEARCH

Identification of human miRNA precursors that resemble box C/D snoRNAs

(2011) Motoharu Ono et al.   NUCLEIC ACIDS RESEARCH

Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing

(2011) Xue-hai Liang et al.   NUCLEIC ACIDS RESEARCH

Loss of ribosomal RNA modification causes developmental defects in zebrafish

(2011) Sayomi Higa-Nakamine et al.   NUCLEIC ACIDS RESEARCH

Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression

(2011) Manli Shen et al.   NUCLEIC ACIDS RESEARCH

Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis

(2011) Y-P Mei et al.   ONCOGENE

Diagnostic and prognostic signatures from the small non-coding RNA transcriptome in prostate cancer

(2011) E S Martens-Uzunova et al.   ONCOGENE

Nuclear Pore Complex Protein Mediated Nuclear Localization of Dicer Protein in Human Cells

(2011) Yoshinari Ando et al.   PLoS One

Identification and Analysis of Intermediate Size Noncoding RNAs in the Human Fetal Brain

(2011) Dongsheng Yan et al.   PLoS One

Reduction in Inflammatory Gene Expression in Skeletal Muscle from Roux-en-Y Gastric Bypass Patients Randomized to Omentectomy

(2011) Robyn A. Tamboli et al.   PLoS One

NcRNA-microchip analysis

(2011) Roland Hutzinger et al.   RNA Biology

Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin

(2011) Alexander Maxwell Burroughs et al.   RNA Biology

RNA in pieces

(2011) Alex C. Tuck et al.   TRENDS IN GENETICS

Diversity of animal small RNA pathways and their biological utility

(2011) Katsutomo Okamura   Wiley Interdisciplinary Reviews-RNA

Transfer RNA-derived fragments: origins, processing, and functions

(2011) Andrew Sobala et al.   Wiley Interdisciplinary Reviews-RNA

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

(2011) Nicholas J. Watkins et al.   Wiley Interdisciplinary Reviews-RNA

Ribosomopathies: human disorders of ribosome dysfunction

(2010) A. Narla et al.   BLOOD

Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood

(2010) Candida Vaz et al.   BMC GENOMICS

Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer

(2010) H H Cheung et al.   BRITISH JOURNAL OF CANCER

Small ncRNA Expression and Regulation Under Hypoxia in Neural Progenitor Cells

(2010) Zhao-hui Liu et al.   CELLULAR AND MOLECULAR NEUROBIOLOGY

Toxicology of Autoimmune Diseases

(2010) K. Michael Pollard et al.   CHEMICAL RESEARCH IN TOXICOLOGY

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

Analysis of Human Small Nucleolar RNAs (snoRNA) and the Development of snoRNA Modulator of Gene Expression Vectors

(2010) Motoharu Ono et al.   MOLECULAR BIOLOGY OF THE CELL

Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer

(2010) Jipei Liao et al.   Molecular Cancer

Box H/ACA Small Ribonucleoproteins

(2010) Tamás Kiss et al.   MOLECULAR CELL

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans

(2010) Ryan J Taft et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mice with altered serotonin 2C receptor RNA editing display characteristics of Prader–Willi syndrome

(2010) Michael V. Morabito et al.   NEUROBIOLOGY OF DISEASE

Structural basis of microRNA length variety

(2010) Julia Starega-Roslan et al.   NUCLEIC ACIDS RESEARCH

Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

(2010) Markus Brameier et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing of Human Nuclear and Cytoplasmic Small RNAs Reveals an Unexpectedly Complex Subcellular Distribution of miRNAs and tRNA 3′ Trailers

(2010) Jian-You Liao et al.   PLoS One

Dicer Is Associated with Ribosomal DNA Chromatin in Mammalian Cells

(2010) Lasse Sinkkonen et al.   PLoS One

Digital Genome-Wide ncRNA Expression, Including SnoRNAs, across 11 Human Tissues Using PolyA-Neutral Amplification

(2010) John C. Castle et al.   PLoS One

Regulation of alternative splicing by short non-coding nuclear RNAs

(2010) Amit Khanna et al.   RNA Biology

Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation

(2010) J. Ge et al.   RNA

Maturation of eukaryotic ribosomes: acquisition of functionality

(2010) Vikram Govind Panse et al.   TRENDS IN BIOCHEMICAL SCIENCES

The Cajal Body and Histone Locus Body

(2010) Z. Nizami et al.   Cold Spring Harbor Perspectives in Biology

Splicing by Exon Exclusion Impaired by Artificial Box C/D RNA Targeted to Branch-Point Adenosine

(2009) Dmitry V. Semenov et al.   Annals of the New York Academy of Sciences

Anti-U3 RNP autoantibodies in systemic sclerosis

(2009) Rohit Aggarwal et al.   ARTHRITIS AND RHEUMATISM

DKC1 overexpression associated with prostate cancer progression

(2009) P Sieron et al.   BRITISH JOURNAL OF CANCER

Loss of the imprinted snoRNA mbii-52 leads to increased 5htr2c pre-RNA editing and altered 5HT2CR-mediated behaviour

(2009) Christine M. Doe et al.   HUMAN MOLECULAR GENETICS

The Box H/ACA Ribonucleoprotein Complex: Interplay of RNA and Protein Structures in Post-transcriptional RNA Modification

(2009) Tomoko Hamma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Implication of snoRNA U50 in human breast cancer

(2009) Xue-Yuan Dong et al.   Journal of Genetics and Genomics

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

(2009) Helena Persson et al.   NATURE CELL BIOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy

(2009) Agnès Baudin-Baillieu et al.   NUCLEIC ACIDS RESEARCH

Dysregulation of Ribosome Biogenesis and Translational Capacity Is Associated with Tumor Progression of Human Breast Cancer Cells

(2009) Stéphane Belin et al.   PLoS One

Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing

(2009) X.-h. Liang et al.   RNA

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

Regulation of mammalian microRNA processing and function by cellular signaling and subcellular localization

(2008) N SMALHEISER   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Hidden layers of human small RNAs

(2008) Hideya Kawaji et al.   BMC GENOMICS

The GAS5 (growth arrest-specific transcript 5) gene fuses to BCL6 as a result of t(1;3)(q25;q27) in a patient with B-cell lymphoma

(2008) Yuichi Nakamura et al.   CANCER GENETICS AND CYTOGENETICS

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

(2008) J. E. Babiarz et al.   GENES & DEVELOPMENT

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster

(2008) Trilochan Sahoo et al.   NATURE GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer

(2008) M Mourtada-Maarabouni et al.   ONCOGENE

Mutations in the telomerase component NHP2 cause the premature ageing syndrome dyskeratosis congenita

(2008) T. Vulliamy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping

(2008) J. Esguerra et al.   RNA

snoRNA, a Novel Precursor of microRNA in Giardia lamblia

(2008) Ashesh A. Saraiya et al.   PLoS Pathogens

snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions

(2007) Peter S. Bazeley et al.   GENE