Light-induced Changes in the Dimerization Interface of Bacteriophytochromes

Connection between Absorption Properties and Conformational Changes in Deinococcus radiodurans Phytochrome

(2014) Heikki Takala et al.   BIOCHEMISTRY

Origins of Fluorescence in Evolved Bacteriophytochromes

(2014) Shyamosree Bhattacharya et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion

(2014) E. Sethe Burgie et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FTIR Spectroscopy Revealing Light-Dependent Refolding of the Conserved Tongue Region of Bacteriophytochrome

(2014) Emina A. Stojković et al.   Journal of Physical Chemistry Letters

Crystallographic snapshot of the Escherichia coli EnvZ histidine kinase in an active conformation

(2014) Hedda U. Ferris et al.   JOURNAL OF STRUCTURAL BIOLOGY

Signal amplification and transduction in phytochrome photosensors

(2014) Heikki Takala et al.   NATURE

Illuminating cell signalling with optogenetic tools

(2014) Doug Tischer et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Phytochromes: An Atomic Perspective on Photoactivation and Signaling

(2014) E. Sethe Burgie et al.   PLANT CELL

Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome

(2014) E. S. Burgie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An optimized optogenetic clustering tool for probing protein interaction and function

(2014) Amir Taslimi et al.   Nature Communications

Visualizing autophosphorylation in histidine kinases

(2014) Patricia Casino et al.   Nature Communications

Benchmarking of Optical Dimerizer Systems

(2014) Gopal P. Pathak et al.   ACS Synthetic Biology

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation

(2014) Ariel E. Mechaly et al.   PLOS BIOLOGY

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Unusual Spectral Properties of Bacteriophytochrome Agp2 Result from a Deprotonation of the Chromophore in the Red-absorbing Form Pr

(2013) Benjamin Zienicke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure of the Cyanobacterial Phytochrome 2 Photosensor Implies a Tryptophan Switch for Phytochrome Signaling

(2013) Katrin Anders et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fluorescence Properties of the Chromophore-Binding Domain of Bacteriophytochrome from Deinococcus radiodurans

(2013) Heli Lehtivuori et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structure-Guided Engineering of Plant Phytochrome B with Altered Photochemistry and Light Signaling

(2013) J. Zhang et al.   PLANT PHYSIOLOGY

Full-Length Structure of a Sensor Histidine Kinase Pinpoints Coaxial Coiled Coils as Signal Transducers and Modulators

(2013) Ralph P. Diensthuber et al.   STRUCTURE

Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor Domains

(2013) Chen Wang et al.   PLOS BIOLOGY

Dimerization properties of theRpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis

(2012) Dom Bellini et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure of a Bacteriophytochrome and Light-Stimulated Protomer Swapping with a Gene Repressor

(2012) Dom Bellini et al.   STRUCTURE

Bacterial phytochromes: More than meets the light

(2011) Michele E. Auldridge et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein

(2011) Michele E. Auldridge et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Spectroscopy and a High-Resolution Crystal Structure of Tyr263 Mutants of Cyanobacterial Phytochrome Cph1

(2011) Jo Mailliet et al.   JOURNAL OF MOLECULAR BIOLOGY

Probing pH-Dependent Dissociation of HdeA Dimers

(2011) Bin W. Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome

(2011) Xiaojing Yang et al.   NATURE

Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models

(2010) Pär Bjelkmar et al.   Journal of Chemical Theory and Computation

g_wham—A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates

(2010) Jochen S. Hub et al.   Journal of Chemical Theory and Computation

Spectroscopic and Photochemical Characterization of the Red-Light Sensitive Photosensory Module of Cph2 from Synechocystis PCC 6803

(2010) Katrin Anders et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy

(2010) H. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tightening the Knot in Phytochrome by Single-Molecule Atomic Force Microscopy

(2009) Thomas Bornschlögl et al.   BIOPHYSICAL JOURNAL

Structural Insight into Partner Specificity and Phosphoryl Transfer in Two-Component Signal Transduction

(2009) Patricia Casino et al.   CELL

Molecular Dynamics Simulations of the Chromophore Binding Site ofDeinococcus radioduransBacteriophytochrome Using New Force Field Parameters for the Phytochromobilin Chromophore

(2009) Steve Kaminski et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Obligate Heterodimerization of Arabidopsis Phytochromes C and E and Interaction with the PIF3 Basic Helix-Loop-Helix Transcription Factor

(2009) T. Clack et al.   PLANT CELL

Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome

(2009) X. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of PAS-Linked Histidine Kinase and the Response Regulator Complex

(2009) Seiji Yamada et al.   STRUCTURE

The PHY domain is required for conformational stability and spectral integrity of the bacteriophytochrome from Deinococcus radiodurans

(2008) Joo-Mi Yoon et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Mutational Analysis ofDeinococcus radioduransBacteriophytochrome Reveals Key Amino Acids Necessary for the Photochromicity and Proton Exchange Cycle of Phytochromes

(2008) Jeremiah R. Wagner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Spectral properties of phytochrome Agp2 from Agrobacterium tumefaciens are specifically modified by a compound of the cell extract

(2008) Alexander Krieger et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

The structure of a complete phytochrome sensory module in the Pr ground state

(2008) L.-O. Essen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

(2008) X. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA