Identification of signatures of selection for intramuscular fat and backfat thickness in two Duroc populations1

Dietary energy source largely affects tissue fatty acid composition but has minor influence on gene transcription in Iberian pigs1

(2014) C. Óvilo et al.   JOURNAL OF ANIMAL SCIENCE

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Response to selection for decreased backfat thickness at restrained intramuscular fat content in Duroc pigs1

(2013) R. Ros-Freixedes et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide association of meat quality traits and tenderness in swine1,2

(2013) D. J. Nonneman et al.   JOURNAL OF ANIMAL SCIENCE

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle

(2013) Eui-Soo Kim et al.   PLoS One

Signatures of Diversifying Selection in European Pig Breeds

(2013) Samantha Wilkinson et al.   PLoS Genetics

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits

(2012) Angela C�novas et al.   BMC GENOMICS

A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits

(2012) Jared E Decker et al.   BMC GENOMICS

Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle

(2012) Hermann Schwarzenbacher et al.   BMC GENOMICS

Mapping and tissue mRNA expression analysis of the pig solute carrier 27A (SLC27A) multigene family

(2012) D. Gallardo et al.   GENE

Genomic architecture of heritability and genetic correlations for intramuscular and back fat contents in Duroc pigs1

(2012) J. Hernández-Sánchez et al.   JOURNAL OF ANIMAL SCIENCE

The effects of leptin receptor (LEPR) and melanocortin-4 receptor (MC4R) polymorphisms on fat content, fat distribution and fat composition in a Duroc×Landrace/Large White cross

(2012) A. Galve et al.   Livestock Science

Association of single nucleotide polymorphism (SNP) markers in candidate genes and QTL regions with pork quality traits in commercial pigs

(2012) G.A. Rohrer et al.   MEAT SCIENCE

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

(2012) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of porcine leptin receptor gene polymorphisms on backfat thickness, fat area ratios by image analysis, and serum leptin concentrations in a Duroc purebred population

(2011) Yoshinobu UEMOTO et al.   ANIMAL SCIENCE JOURNAL

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Porcine intramuscular fat content and composition are regulated by quantitative trait loci with muscle-specific effects1

(2011) R. Quintanilla et al.   JOURNAL OF ANIMAL SCIENCE

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA

(2011) Andreia J. Amaral et al.   PLoS One

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Functional and association studies on the pig HMGCR gene, a cholesterol-synthesis limiting enzyme

(2009) A. Cánovas et al.   Animal

Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

(2009) William Barendse et al.   BMC GENOMICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection1

(2009) C. R. Schwab et al.   JOURNAL OF ANIMAL SCIENCE

Genetic correlations and expected response for intramuscular fat content in a Duroc pig line

(2008) F.X. Solanes et al.   Livestock Science