Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics

The use of genomics, proteomics, and metabolomics in identifying biomarkers of male infertility

(2013) Jason R. Kovac et al.   FERTILITY AND STERILITY

VennPlex–A Novel Venn Diagram Program for Comparing and Visualizing Datasets with Differentially Regulated Datapoints

(2013) Huan Cai et al.   PLoS One

Scanning of novel cancer/testis proteins by human testis proteomic analysis

(2013) Mingxi Liu et al.   PROTEOMICS

RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing

(2012) Markus Krupp et al.   BIOINFORMATICS

The cancer testis antigen PRAME as a biomarker for solid tumor cancer management

(2012) Steve Goodison et al.   Biomarkers in Medicine

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Metabolic regulation is important for spermatogenesis

(2012) Luís Rato et al.   Nature Reviews Urology

HMDB 3.0—The Human Metabolome Database in 2013

(2012) David S. Wishart et al.   NUCLEIC ACIDS RESEARCH

An integrated bioinformatics analysis of mouse testis protein profiles with new understanding

(2011) Fujun Liu et al.   BMB Reports

An update on the clinical assessment of the infertile male

(2011) Sandro C. Esteves et al.   Clinics

Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features

(2011) Xiaofeng Song et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Bioinformatics approaches in the discovery and understanding of reproduction-related biomarkers

(2011) Athanasios K Anagnostopoulos et al.   Expert Review of Proteomics

The role of mitochondria in energy production for human sperm motility

(2011) P. Piomboni et al.   INTERNATIONAL JOURNAL OF ANDROLOGY

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse

(2011) J. T. Eppig et al.   NUCLEIC ACIDS RESEARCH

Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery

(2011) F. Zhu et al.   NUCLEIC ACIDS RESEARCH

WikiPathways: building research communities on biological pathways

(2011) T. Kelder et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

SProtP: A Web Server to Recognize Those Short-Lived Proteins Based on Sequence-Derived Features in Human Cells

(2011) Xiaofeng Song et al.   PLoS One

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Proteomics of spermatogenesis: from protein lists to understanding the regulation of male fertility and infertility

(2010) Xiao-Yan Huang et al.   ASIAN JOURNAL OF ANDROLOGY

The ’omics revolution and our understanding of sperm cell biology

(2010) Mark A Baker   ASIAN JOURNAL OF ANDROLOGY

TiSGeD: a database for tissue-specific genes

(2010) S. J. Xiao et al.   BIOINFORMATICS

Microarray-Based Analysis of Cell-Cycle Gene Expression During Spermatogenesis in the Mouse1

(2010) Dipanwita Roy Choudhury et al.   BIOLOGY OF REPRODUCTION

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

MAGE A3 antigen-specific cancer immunotherapeutic

(2010) Nir Peled et al.   Immunotherapy

Investigation of Human Testis Protein Heterogeneity Using 2-Dimensional Electrophoresis

(2010) X. Guo et al.   JOURNAL OF ANDROLOGY

Proteomic Analysis of Proteins Involved in Spermiogenesis in Mouse

(2010) Xuejiang Guo et al.   JOURNAL OF PROTEOME RESEARCH

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

Testicular postgenomics: targeting the regulation of spermatogenesis

(2010) P. Calvel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Proteomic analysis of male 4C germ cell proteins involved in mouse meiosis

(2010) Xuejiang Guo et al.   PROTEOMICS

ReCGiP, a database of reproduction candidate genes in pigs based on bibliomics

(2010) Lun Yang et al.   Reproductive Biology and Endocrinology

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle

(2010) A. Lardenois et al.   Database-The Journal of Biological Databases and Curation

Proteome analysis of round-headed and normal spermatozoa by 2-D fluorescence difference gel electrophoresis and mass spectrometry

(2009) Ting-Ting Liao et al.   ASIAN JOURNAL OF ANDROLOGY

Identification of human sperm transcripts as candidate markers of male fertility

(2009) Claudia Lalancette et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Proteomics Identifications database: 2010 update

(2009) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

Four potential biomarkers as prognostic factors in stage III serous ovarian adenocarcinomas

(2008) Karolina Partheen et al.   INTERNATIONAL JOURNAL OF CANCER

Construction of a Proteome Profile and Functional Analysis of the Proteins Involved in the Initiation of Mouse Spermatogenesis

(2008) Xiao-yan Huang et al.   JOURNAL OF PROTEOME RESEARCH

The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server

(2008) Christine Hoogland et al.   Journal of Proteomics

GermSAGE: a comprehensive SAGE database for transcript discovery on male germ cell development

(2008) T.-L. Lee et al.   NUCLEIC ACIDS RESEARCH

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

(2008) L. G. Almeida et al.   NUCLEIC ACIDS RESEARCH

MicroRNA Biogenesis Is Required for Mouse Primordial Germ Cell Development and Spermatogenesis

(2008) Katsuhiko Hayashi et al.   PLoS One

Genome-wide analysis of cancer/testis gene expression

(2008) O. Hofmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the human testis proteome by mass spectrometry and bioinformatics

(2008) Xuejiang Guo et al.   Proteomics Clinical Applications