Microbial community analysis in rice paddy soils irrigated by acid mine drainage contaminated water

Rhodoplanes oryzae sp. nov., a phototrophic alphaproteobacterium isolated from the rhizosphere soil of paddy

(2014) A. Srinivas et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Long-term nitrogen fertilization of paddy soil shifts iron-reducing microbial community revealed by RNA-13C-acetate probing coupled with pyrosequencing

(2014) Long-Jun Ding et al.   ISME Journal

Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing

(2013) Ana R. Lopes et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing Analysis of Bacterial Diversity in 14 Wastewater Treatment Systems in China

(2012) Xiaohui Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Halomonas and Marinobacter ecotypes from hydrothermal vent, subseafloor and deep-sea environments

(2010) Jonathan Z. Kaye et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhodoplanes serenus sp. nov., a purple non-sulfur bacterium isolated from pond water

(2009) K. Okamura et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Rhodoplanes pokkaliisoli sp. nov., a phototrophic alphaproteobacterium isolated from a waterlogged brackish paddy soil

(2009) K. V. N. S. Lakshmi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of iron-reducing microorganisms in anoxic rice paddy soil by 13C-acetate probing

(2009) Tomoyuki Hori et al.   ISME Journal

Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China

(2009) Xin-Jun Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Abundance and community structure of sulfate reducing prokaryotes in a paddy soil of southern China under different fertilization regimes

(2009) Xin-Zhan Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY