Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes

Real-time imaging reveals that lytic polysaccharide monooxygenase promotes cellulase activity by increasing cellulose accessibility

(2018) Bo Song et al.   Biotechnology for Biofuels

A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi

(2018) Gerald N. Presley et al.   FUNGAL GENETICS AND BIOLOGY

The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. –  Acephala appalanata species complex

(2017) Brent M. Robicheau et al.   Fungal Biology

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs

(2017) Raisa Mäkipää et al.   ISME Journal

Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2

(2017) Bastien Bissaro et al.   Nature Chemical Biology

A Lytic Polysaccharide Monooxygenase with Broad Xyloglucan Specificity from the Brown-Rot Fungus Gloeophyllum trabeum and Its Action on Cellulose-Xyloglucan Complexes

(2016) Yuka Kojima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

(2016) Markus Schlegel et al.   BMC GENOMICS

Dynamics of fungal community composition, decomposition and resulting deadwood properties in logs of Fagus sylvatica , Picea abies and Pinus sylvestris

(2016) Tobias Arnstadt et al.   FOREST ECOLOGY AND MANAGEMENT

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

(2016) Felipe Bastida et al.   MOLECULAR ECOLOGY

Basidiomycete DyPs: Genomic diversity, structural–functional aspects, reaction mechanism and environmental significance

(2015) Dolores Linde et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Habitat models of wood-inhabiting fungi along a decay gradient of Norway spruce logs

(2015) Tiina Rajala et al.   Fungal Ecology

Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry

(2015) Jennifer M. Talbot et al.   SOIL BIOLOGY & BIOCHEMISTRY

A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies

(2015) Björn Hoppe et al.   Scientific Reports

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated withPiloderma-Pinussymbiosis: improved methodologies for assessing gene expressionin situ

(2014) H.-L. Liao et al.   ENVIRONMENTAL MICROBIOLOGY

Species associations during the succession of wood-inhabiting fungal communities

(2014) Elisabet Ottosson et al.   Fungal Ecology

Widespread Occurrence of Expressed Fungal Secretory Peroxidases in Forest Soils

(2014) Harald Kellner et al.   PLoS One

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

(2014) Chiaki Hori et al.   PLoS Genetics

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Fungal community dynamics in relation to substrate quality of decaying Norway spruce (Picea abies [L.] Karst.) logs in boreal forests

(2012) Tiina Rajala et al.   FEMS MICROBIOLOGY ECOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing

(2012) A. Kubartová et al.   MOLECULAR ECOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

(2012) Coralie Damon et al.   PLoS One

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

(2012) E. Fernandez-Fueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Proteomic and Functional Analysis of the Cellulase System Expressed by Postia placenta during Brown Rot of Solid Wood

(2011) Jae San Ryu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

(2011) Jonathan M. Plett et al.   CURRENT BIOLOGY

Initial fungal colonizer affects mass loss and fungal community development in Picea abies logs 6yr after inoculation

(2011) Daniel L. Lindner et al.   Fungal Ecology

RNA reveals a succession of active fungi during the decay of Norway spruce logs

(2011) Tiina Rajala et al.   Fungal Ecology

Laccase and Its Role in Production of Extracellular Reactive Oxygen Species during Wood Decay by the Brown Rot Basidiomycete Postia placenta

(2010) D. Wei et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New and classic families of secreted fungal heme peroxidases

(2010) Martin Hofrichter et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

An Oxidative Enzyme Boosting the Enzymatic Conversion of Recalcitrant Polysaccharides

(2010) Gustav Vaaje-Kolstad et al.   SCIENCE

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

(2009) Vendula Valášková et al.   ISME Journal