Characterizing the Dynamics of Proteasome Complexes by Proteomics Approaches

Toward Understanding Induction of Oxidative Stress and Apoptosis by Proteasome Inhibitors

(2014) Guillem Paniagua Soriano et al.   ANTIOXIDANTS & REDOX SIGNALING

The left and right ventricle in the grip of protein degradation: Similarities and unique patterns in regulation

(2014) Oliver Drews   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Localization of the regulatory particle subunit Sem1 in the 26S proteasome

(2013) Stefan Bohn et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Conformational switching of the 26S proteasome enables substrate degradation

(2013) Mary E Matyskiela et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomics

(2012) Sarah B. Scruggs et al.   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

The Lysine48-Based Polyubiquitin Chain Proteasomal Signal: Not a Single Child Anymore

(2012) Yelena Kravtsova-Ivantsiv et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mass Spectrometry–Based Proteomics and Network Biology

(2012) Ariel Bensimon et al.   Annual Review of Biochemistry

Differential roles of proteasome and immunoproteasome regulators Pa28αβ, Pa28γ and Pa200 in the degradation of oxidized proteins

(2012) Andrew M. Pickering et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Development of proteasome inhibitors as research tools and cancer drugs

(2012) Alfred L. Goldberg   JOURNAL OF CELL BIOLOGY

Non-canonical ubiquitin-based signals for proteasomal degradation

(2012) Y. Kravtsova-Ivantsiv et al.   JOURNAL OF CELL SCIENCE

Subcellular Distribution and Dynamics of Active Proteasome Complexes Unraveled by a Workflow Combiningin VivoComplex Cross-Linking and Quantitative Proteomics

(2012) Bertrand Fabre et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping the Structural Topology of the Yeast 19S Proteasomal Regulatory Particle Using Chemical Cross-linking and Probabilistic Modeling

(2012) Athit Kao et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping the Protein Interaction Network of the Human COP9 Signalosome Complex Using a Label-free QTAX Strategy

(2012) Lei Fang et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein damage, repair and proteolysis

(2012) Niki Chondrogianni et al.   MOLECULAR ASPECTS OF MEDICINE

Molecular Model of the Human 26S Proteasome

(2012) Paula C.A. da Fonseca et al.   MOLECULAR CELL

Complete subunit architecture of the proteasome regulatory particle

(2012) Gabriel C. Lander et al.   NATURE

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

(2012) Thomas Walzthoeni et al.   NATURE METHODS

Identification of cross-linked peptides from complex samples

(2012) Bing Yang et al.   NATURE METHODS

Atypical ubiquitylation — the unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages

(2012) Yogesh Kulathu et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy

(2012) E. Sakata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

(2012) N. Kalisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

(2012) K. Lasker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Near-atomic resolution structural model of the yeast 26S proteasome

(2012) F. Beck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

(2012) F. Herzog et al.   SCIENCE

Coordination of cell growth and division by the ubiquitin–proteasome system

(2012) Jennifer A. Benanti   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Therapeutic targeting of cancer cell cycle using proteasome inhibitors

(2012) Namrata Rastogi et al.   Cell Division

Intracellular protein degradation: From a vague idea thru the lysosome and the ubiquitin–proteasome system and onto human diseases and drug targeting

(2011) Aaron Ciechanover   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The role of the proteasome in the generation of MHC class I ligands and immune responses

(2011) E. J. A. M. Sijts et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Proteomics to study the diversity and dynamics of proteasome complexes: from fundamentals to the clinic

(2011) Marie-Pierre Bousquet-Dubouch et al.   Expert Review of Proteomics

Proteasome Activator 200: The HEAT is on…

(2011) Anca F. Savulescu et al.   MOLECULAR & CELLULAR PROTEOMICS

Oxidative Stress-Mediated Regulation of Proteasome Complexes

(2011) Charity T. Aiken et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteome Dynamics and Proteome Function of Cardiac 19S Proteasomes

(2011) Ding Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

UBLCP1 is a 26S proteasome phosphatase that regulates nuclear proteasome activity

(2011) X. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of Cullin-RING Ubiquitin Ligase Network Revealed by Systematic Quantitative Proteomics

(2010) Eric J. Bennett et al.   CELL

Enhancement of proteasome function by PA28α overexpression protects against oxidative stress

(2010) Jie Li et al.   FASEB JOURNAL

Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

(2010) Robyn M. Kaake et al.   JOURNAL OF PROTEOME RESEARCH

Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry

(2010) Danielle Vellucci et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Toward an Integrated Structural Model of the 26S Proteasome

(2010) Friedrich Förster et al.   MOLECULAR & CELLULAR PROTEOMICS

Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes

(2010) Athit Kao et al.   MOLECULAR & CELLULAR PROTEOMICS

Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics

(2010) Alexander Leitner et al.   MOLECULAR & CELLULAR PROTEOMICS

Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry

(2010) Robyn M. Kaake et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry

(2010) Sarah Pelletier et al.   Molecular BioSystems

Heterohexameric Ring Arrangement of the Eukaryotic Proteasomal ATPases: Implications for Proteasome Structure and Assembly

(2010) Robert J. Tomko et al.   MOLECULAR CELL

Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution

(2010) S. Bohn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the 26S Proteasome Complex During Oxidative Stress

(2010) X. Wang et al.   Science Signaling

Effects of ethanol on the proteasome interacting proteins

(2010) Fawzia Bardag-Gorce   WORLD JOURNAL OF GASTROENTEROLOGY

Recognition and Processing of Ubiquitin-Protein Conjugates by the Proteasome

(2009) Daniel Finley   Annual Review of Biochemistry

An atomic model AAA-ATPase/20S core particle sub-complex of the 26S proteasome

(2009) Friedrich Förster et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Defining the Human Deubiquitinating Enzyme Interaction Landscape

(2009) Mathew E. Sowa et al.   CELL

Quantitative Proteomics Reveals the Function of Unconventional Ubiquitin Chains in Proteasomal Degradation

(2009) Ping Xu et al.   CELL

Affinity Purification Strategy to Capture Human Endogenous Proteasome Complexes Diversity and to Identify Proteasome-interacting Proteins

(2009) Marie-Pierre Bousquet-Dubouch et al.   MOLECULAR & CELLULAR PROTEOMICS

Insights into the molecular architecture of the 26S proteasome

(2009) S. Nickell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chronic ethanol feeding affects proteasome-interacting proteins

(2009) Marie-Pierre Bousquet-Dubouch et al.   PROTEOMICS

Small-Molecule Inhibitors of the MDM2-p53 Protein-Protein Interaction to Reactivate p53 Function: A Novel Approach for Cancer Therapy

(2008) Sanjeev Shangary et al.   Annual Review of Pharmacology and Toxicology

Regulation of proteasome-mediated protein degradation during oxidative stress and aging

(2008) Nicolle Breusing et al.   BIOLOGICAL CHEMISTRY

Scaled-Down Purification Protocol To Access Proteomic Analysis of 20S Proteasome from Human Tissue Samples: Comparison of Normal and Tumor Colorectal Cells

(2008) Manuelle Ducoux-Petit et al.   JOURNAL OF PROTEOME RESEARCH

Contrasting Proteome Biology and Functional Heterogeneity of the 20 S Proteasome Complexes in Mammalian Tissues

(2008) Aldrin V. Gomes et al.   MOLECULAR & CELLULAR PROTEOMICS

Revealing the Dynamics of the 20 S Proteasome Phosphoproteome

(2008) Haojie Lu et al.   MOLECULAR & CELLULAR PROTEOMICS

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

(2008) C. Guerrero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA