Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

Nonprotein Based Enrichment Method to Analyze Peptide Cross-Linking in Protein Complexes

(2009) Funing Yan et al.   ANALYTICAL CHEMISTRY

Identification of Cross-Linked Peptides after Click-Based Enrichment Using Sequential Collision-Induced Dissociation and Electron Transfer Dissociation Tandem Mass Spectrometry

(2009) Saiful M. Chowdhury et al.   ANALYTICAL CHEMISTRY

Analysis of Tandem Mass Spectra by FTMS for Improved Large-Scale Proteomics with Superior Protein Quantification

(2009) Graeme C. McAlister et al.   ANALYTICAL CHEMISTRY

Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality

(2009) Ellen M. Sletten et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Intra-Molecular Cross-Linking of Acidic Residues for Protein Structure Studies

(2009) Petr Novák et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Chemical cross-linking with NHS esters: a systematic study on amino acid reactivities

(2009) Stefanie Mädler et al.   JOURNAL OF MASS SPECTROMETRY

Selective Enrichment of Azide-Containing Peptides from Complex Mixtures

(2009) Merel A. Nessen et al.   JOURNAL OF PROTEOME RESEARCH

Probability-based shotgun cross-linking sites analysis

(2009) Young Jin Lee   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Probing Akt-inhibitor interaction by chemical cross-linking and mass spectrometry

(2009) Bill X. Huang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Finding Chimeras: a Bioinformatics Strategy for Identification of Cross-linked Peptides

(2009) Feixia Chu et al.   MOLECULAR & CELLULAR PROTEOMICS

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

(2009) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Interface Analysis of the Complex between ERK2 and PTP-SL

(2009) Mihaela C. Balasu et al.   PLoS One

Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry

(2009) Sebyung Kang et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Nested Arg-specific bifunctional crosslinkers for MS-based structural analysis of proteins and protein assemblies

(2008) Qingrong Zhang et al.   ANALYTICA CHIMICA ACTA

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

(2008) Judy Toews et al.   ANALYTICA CHIMICA ACTA

Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters

(2008) Stefan Kalkhof et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy

(2008) Pragya Singh et al.   ANALYTICAL CHEMISTRY

Comparison of Two-Dimensional Fractionation Techniques for Shotgun Proteomics

(2008) James A. Dowell et al.   ANALYTICAL CHEMISTRY

Integrating Diverse Data for Structure Determination of Macromolecular Assemblies

(2008) Frank Alber et al.   Annual Review of Biochemistry

Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex

(2008) Claudio Ciferri et al.   CELL

Recent Progress and Future Directions in Protein-Protein Docking

(2008) David Ritchie   CURRENT PROTEIN & PEPTIDE SCIENCE

Utility of formaldehyde cross-linking and mass spectrometry in the study of protein–protein interactions

(2008) Brent W. Sutherland et al.   JOURNAL OF MASS SPECTROMETRY

An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

(2008) Alexander Schmidt et al.   MOLECULAR & CELLULAR PROTEOMICS

In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types

(2008) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry

(2008) Haizhen Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass spectrometric analysis of cross-linking sites for the structure of proteins and protein complexes

(2008) Young Jin Lee   Molecular BioSystems

Photocrosslinkers illuminate interactions in living cells

(2008) Yoshihito Tanaka et al.   Molecular BioSystems

Erratum: Corrigendum: Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS