Article
Engineering, Biomedical
Hui Zhou, Janny Pineiro Llanes, Malisa Sarntinoranont, Ghatu Subhash, Chelsey S. Simmons
Summary: The study established a method to determine the alignment of proteins in soft tissues using polarized Raman spectroscopy (PRS), which offers non-destructive, label-free sample preparation, and developed an Amplitude Alignment Metric for evaluation. The research found that this method provides a high level of alignment in soft tissues.
ACTA BIOMATERIALIA
(2021)
Article
Chemistry, Analytical
Yue Wang, Cheng Cheng, Ruofei Ma, Zhangrun Xu, Yukihiro Ozaki
Summary: Visualization of signaling molecules in single living cells is crucial for understanding cellular metabolism and physiology. This study proposed a label-free nanosensor strategy based on surface-enhanced Raman scattering (SERS) spectroscopy for in situ imaging of intracellular H2O2 in single living cancer cells.
Article
Biophysics
Anchisa Poonprasartporn, K. L. Andrew Chan
Summary: Conventional in vitro study often involves destructive methods and cannot monitor changes over time. This research presents a label-free live-cell FTIR method that directly measures biochemical changes within living cells. The study investigates the effects of two anti-diabetic drugs on insulin-resistant liver cells and demonstrates the differences in biochemical profiles between normal and insulin-resistant cells, lack of response from insulin-resistant cells to insulin, and restoration of biochemical profile after drug treatment.
BIOSENSORS & BIOELECTRONICS
(2022)
Article
Biochemical Research Methods
Jianbo Fu, Qingxia Yang, Yongchao Luo, Song Zhang, Jing Tang, Ying Zhang, Hongning Zhang, Hanxiang Xu, Feng Zhu
Summary: Label-free quantification (LFQ) is an important technique in proteomics due to its broad proteome coverage and enhanced reproducibility. In this study, an R package EVALFQ was developed to evaluate and discover well-performing LFQ chains from over 3000 options.
BRIEFINGS IN BIOINFORMATICS
(2022)
Article
Biochemical Research Methods
Eliran Dafna, Israel Gannot
Summary: The system for bacteria identification utilizes absorption spectroscopy and deep learning algorithm, achieving real-time results without offline postprocessing. It is highly sensitive and specific, and can be extended to other bacterium types.
JOURNAL OF BIOPHOTONICS
(2023)
Article
Biochemical Research Methods
Jianbo Fu, Qingxia Yang, Yongchao Luo, Song Zhang, Jing Tang, Ying Zhang, Hongning Zhang, Hanxiang Xu, Feng Zhu
Summary: The label-free quantification (LFQ) is a powerful technique in proteomics due to its broad proteome coverage, great dynamic ranges, and enhanced analytical reproducibility. However, determining the well-performing LFQ chain is challenging due to the dependence on data and the diverse possibilities. In this study, a unique R package EVALFQ was developed for performance evaluation of >3000 LFQ chains, utilizing multiple criteria, spiking proteins, and comprehensive assessment. This package is expected to attract broad interests in the field of proteomic quantification.
BRIEFINGS IN BIOINFORMATICS
(2023)
Article
Chemistry, Multidisciplinary
Xindan Hui, Cheng Yang, Dongxiao Li, Xianming He, He Huang, Hong Zhou, Ming Chen, Chengkuo Lee, Xiaojing Mu
Summary: A plasmonic biosensor based on SEIRA for rapid, label-free, and ultrasensitive detection of miR-155 is reported. The use of TDN as carriers greatly improves the limit of detection of the biosensor.
Article
Chemistry, Physical
William B. Weeks, Lauren E. Buchanan
Summary: This article presents a method to distinguish multiple β-sheet structures within peptide and protein aggregates, and demonstrates its effectiveness through experiments. The method utilizes two-dimensional infrared spectroscopy to calculate the transition dipole strength (TDS) spectrum, which provides higher sensitivity to protein structure and can detect structural details that are not observable by other techniques.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Chemistry, Analytical
Sabrina Romano, Flavio Di Giacinto, Aniello Primiano, Jacopo Gervasoni, Alberto Mazzini, Massimiliano Papi, Andrea Urbani, Annalucia Serafino, Marco De Spirito, Ewa K. Krasnowska, Gabriele Ciasca
Summary: FTIR spectroscopy is an effective method for studying the differences in cancer-derived EXOs from different cell phenotypes, providing possibilities for diagnosis. The spectral features of EXOs derived from different cell phenotypes in the infrared range can be used to monitor cell changes effectively.
ANALYTICA CHIMICA ACTA
(2022)
Article
Acoustics
Mirjam Visscher, Miguel A. Pleitez, Kim Van Gaalen, Ingeborg M. Nieuwenhuizen-Bakker, Vasilis Ntziachristos, Gijs Van Soest
Summary: This study used mid-infrared optoacoustic microscopy technology to analyze human carotid plaques and identified correlations between different tissue components and high-risk plaques. This provides a new stain-free method for the biochemical characterization of complex human vascular pathology.
Review
Biochemical Research Methods
Yury V. Kistenev, Anubhab Das, Nirmal Mazumder, Olga P. Cherkasova, Anastasia I. Knyazkova, Alexander P. Shkurinov, Valery V. Tuchin, Igor K. Lednev
Summary: Infectious diseases pose a severe threat to modern society. Current virus detection methods based on genome tests are costly and require specialized laboratories. The desired characteristics for new virus detection methods include noninvasiveness, simplicity, real-time capability, low cost, and label-free detection. This review examines the current technological level of laser spectroscopy and machine learning methods in virus infection detection applications.
JOURNAL OF BIOPHOTONICS
(2022)
Article
Pharmacology & Pharmacy
Suha Elderderi, Franck Bonnier, Xavier Perse, Hugh J. Byrne, Florent Yvergnaux, Igor Chourpa, Abdalla A. Elbashir, Emilie Munnier
Summary: Raman spectroscopy is a useful technique for quantifying complex cosmetic products without the need for extensive pre-analytical processing. This study demonstrates the effectiveness of Raman spectroscopy coupled with partial least squares regression (PLSR) in quantifying Alginate nanoencapsulated Piperonyl Esters (ANC-PE) in a hydrogel. By dividing the samples into a training set and a test set, the accuracy of the prediction model was evaluated, with a root mean square error of cross-validation (RMSECV) and prediction (RMSEP) of 0.142% and 0.148% (w/w PE), respectively. These results highlight the potential of Raman spectroscopy for rapid and label-free quantification of active cosmetic ingredients in complex formulations, promising future applications in analytical quality control (AQC).
Article
Multidisciplinary Sciences
Qamar A. Alshammari, Rajasekharreddy Pala, Nir Katzir, Surya M. Nauli
Summary: The study demonstrated the feasibility of using spectral microscopy for high-resolution imaging of doxorubicin and its metabolite at the single cell level, highlighting the utility of spectral characteristics combined with high-resolution imaging in drug metabolism research. It is proposed that spectral microscopy is a new tool for studying drug localization, translocation, transformation, and identification at a single cell level, while LC/MS is more suitable for drug screening at the organ or tissue level.
SCIENTIFIC REPORTS
(2021)
Article
Chemistry, Analytical
Cai Wang, Jixiang Chen, Jingguo Wu, Huiyu Wan, Qianwen Yue, Baoliang Sun, Ying Wang, Qiang Xiao, Jingyi Sun
Summary: A novel SERS strategy based on a three-dimensional substrate was developed for early diagnosis of thoracolumbar fasciitis (TLF). Vibrational fingerprints obtained by SERS testing were used to analyze the material changes during fasciitis, and the results demonstrated the capability of SERS for noninvasive characterization and diagnosis of TLF.
Article
Chemistry, Analytical
Yaping Zhou, Yao Wan, Ming Yu, Xiaoyan Yuan, Chengjiang Zhang
Summary: A novel label-free electrochemical impedance spectroscopy (EIS) sensor was developed for cancer cell quantification and CD44 expression analysis by conjugating hyaluronic acid (HA) with bovine serum albumin (BSA)-modified gold nanoparticles (GNPs). The sensor showed good detection performance for MDA-MB-231 cells, indicating higher CD44 expression level and metastatic potential compared to other cell types. The proposed sensor may have potential applications in cancer monitoring and research on tumor metastasis.
MICROCHEMICAL JOURNAL
(2021)
Article
Food Science & Technology
Joana Matos, Carlos L. Card, Pedro Fale, Claudia M. Afonso, Narcisa M. Bandarra
INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY
(2020)
Article
Instruments & Instrumentation
Ka Lung Andrew Chan, Ali Altharawi, Pedro Fale, Cai Li Song, Sergei G. Kazarian, Gianfelice Cinque, Valerie Untereiner, Ganesh D. Sockalingum
APPLIED SPECTROSCOPY
(2020)
Article
Integrative & Complementary Medicine
Ana Margarida Rodrigues, Pedro Luis Vieira Fale, Paulo Madeira, Rita Pacheco, Maria Helena Florencio, Lia Ascensao, Maria Luisa Marques Serralheiro
JOURNAL OF HERBAL MEDICINE
(2020)
Article
Chemistry, Analytical
Ka Lung Andrew Chan, Ioannis Lekkas, Mark D. Frogley, Gianfelice Cinque, Ali Altharawi, Gianluca Bello, Lea Ann Dailey
ANALYTICAL CHEMISTRY
(2020)
Article
Chemistry, Analytical
Joshua Phelan, Ali Altharawi, K. L. Andrew Chan
Article
Chemistry, Multidisciplinary
Ali Altharawi, Khondaker Miraz Rahman, Ka Lung Andrew Chan
Article
Biochemistry & Molecular Biology
Anchisa Poonprasartporn, K. L. Andrew Chan
Summary: FTIR spectroscopy is a nondestructive, label-free and low-cost technique that can be used to study metabolic changes in cells. The study demonstrated that live-cell FTIR can effectively highlight differences in glucose metabolism in cells treated with normal and high glucose medium, showing significant differences in spectra.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
(2021)
Article
Pharmacology & Pharmacy
Wachirun Terakosolphan, Ali Altharawi, Anchisa Poonprasartporn, Richard D. Harvey, Ben Forbes, K. L. Andrew Chan
Summary: The study demonstrated the potential of FTIR spectroscopy for quantifying drugs in living cells and evaluating the effects of formulation on drug transport and availability to intracellular targets. The research validated the analytical capability of live-cell FTIR in studying drug uptake and highlighted its usefulness at the forefront of live-cell studies.
INTERNATIONAL JOURNAL OF PHARMACEUTICS
(2021)
Article
Chemistry, Analytical
Jee Kwan Ng, Feng Huai Tay, Patrick Steven Wray, Siti Syazana Mohd Saberi, Kenny Kai Ken Ting, Sook Mei Khor, Ka Lung Andrew Chan
Summary: This study utilized a portable spectrometer to rapidly test alcohol-based hand rub, showing comparable performance with benchtop FT-IR spectrometer and HS-GC-MS. Field-testing in Malaysia revealed that only 75.2% of Group A samples met the criteria for safe and effective hand rub, while less than 50% of Group B did.
ANALYTICAL CHEMISTRY
(2021)
Article
Pharmacology & Pharmacy
Mohammed Suleiman Alsalhi, K. L. Andrew Chan
Summary: This study investigates the interaction between various amino acids and two model drugs, carbamazepine and indomethacin. The results show that different types of amino acids have different effects on the solubility of the drugs. Additionally, a combination of multiple neutral amino acids can significantly increase the solubility of indomethacin.
INTERNATIONAL JOURNAL OF PHARMACEUTICS
(2022)
Article
Multidisciplinary Sciences
Faiza Benaouda, Ricardo Inacio, Chui Hua Lim, Haeeun Park, Thomas Pitcher, Mohamed A. Alhnan, Mazen M. S. Aly, Khuloud Al-Jamal, Ka-lung Chan, Rikhav P. Gala, Daniel Sebastia-Saez, Liang Cui, Tao Chen, Julie Keeble, Stuart A. Jones
Summary: This study demonstrates a novel method for needleless delivery of advanced therapies using a skin patch. By opening the skin appendages with a hypobaric chamber, direct delivery of vaccine antigens and drug nanoparticles was achieved. The patch was shown to enhance immune response to vaccine antigens and effectively reduce rat paw swelling.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Cell Biology
Hany M. Elsheikha, Alaa T. Al-Sandaqchi, Mohammad S. R. Harun, Francesca Winterton, Ali Altharawi, Nashwa A. Elsaied, Carl W. Stevenson, William MacNaughtan, John G. M. Mina, Paul W. Denny, Gianfelice Cinque, Ka Lung Andrew Chan
Summary: This study used FTIR microspectroscopy and synchrotron-based FTIR microspectroscopy to analyze the chemical changes associated with T. gondii infection of hBMECs. The results showed that both methods were able to reveal the chemical alterations in the infected cells. Furthermore, RNA sequencing analysis revealed significant changes in host cell genes and pathways in response to T. gondii infection.
Article
Biophysics
Anchisa Poonprasartporn, K. L. Andrew Chan
Summary: Conventional in vitro study often involves destructive methods and cannot monitor changes over time. This research presents a label-free live-cell FTIR method that directly measures biochemical changes within living cells. The study investigates the effects of two anti-diabetic drugs on insulin-resistant liver cells and demonstrates the differences in biochemical profiles between normal and insulin-resistant cells, lack of response from insulin-resistant cells to insulin, and restoration of biochemical profile after drug treatment.
BIOSENSORS & BIOELECTRONICS
(2022)
Article
Acoustics
Weiqi Zhang, Hilde Metzger, Stavros Vlatakis, Amelia Claxton, M. Alejandra Carbajal, Leong Fan Fung, James Mason, K. L. Andrew Chan, Antonios N. Pouliopoulos, Roland A. Fleck, Paul Prentice, Maya Thanou
Summary: Phase-change nanodroplets, composed of a stabilising shell and a perfluorocarbon core, have recently gained attention as ultrasound theranostic nanoparticles. Nanodroplets can vaporise into echogenic microbubbles forming cavitation nuclei when exposed to ultrasound. However, methods to quantify the perfluorocarbon core in nanodroplets are lacking. In this study, nanodroplets were fabricated using lipids shell and perfluorocarbons, and the amount of perfluorocarbon in the core was assessed using 19F NMR and FTIR. The results showed that the fluorine signal accurately correlated with the perfluorocarbon concentration, allowing for quantification of the core. The study also found that different perfluorocarbons had varying rates of content loss and generated cavitation comparable to commercial contrast agent microbubbles.
ULTRASONICS SONOCHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Mohammed Suleiman Alsalhi, Paul G. Royall, Ka Lung Andrew Chan
Summary: Amino acids can form complexes with poorly water-soluble drugs, improving their physicochemical properties and dissolution profile through molecular interactions. Salt formation between acidic drugs and basic amino acids is the main contributor to solubility enhancement. This study found that non-ionic interactions also play a role in solubility improvement, independent of pH.