Article
Multidisciplinary Sciences
Shwetha Srinivasan, Raju Regmi, Xingcheng Lin, Courtney A. Dreyer, Xuyan Chen, Steven D. Quinn, Wei He, Matthew A. Coleman, Kermit L. Carraway, Bin Zhang, Gabriela S. Schlau-Cohen
Summary: In this study, the authors show that transmembrane conformational coupling is the first step in EGFR signaling, providing evidence for the existence of transmembrane intramolecular conformational changes in a single pass membrane protein. They also found that ligand binding induces intracellular conformational changes within monomeric EGFR, and implicate a series of electrostatic interactions in the conformational coupling. These results suggest that intramolecular transmembrane conformational changes upon ligand binding may be common to single-pass membrane proteins.
NATURE COMMUNICATIONS
(2022)
Article
Chemistry, Multidisciplinary
Shujuan Xu, Lei He, Fengming Chen, Wenya Dang, Sitao Xie, Long Li, Cheng Cui, Yu Yang, Yanlan Liu, Weihong Tan
Summary: A bioinspired strategy is presented for engineering noncovalent aptamers by inducing reassembly of a split G-quadruplex sequence at the end of monomeric aptamers using K+. This design addresses the issue of insufficient cell recognition of monovalent aptamers in biological environments and reduces nonspecific cell binding caused by the structure, thereby expanding the aptamer toolbox for complex systems.
CHEMICAL COMMUNICATIONS
(2023)
Article
Biochemistry & Molecular Biology
Kanika Dhiman, Samir Kumar Nath, Ashish
Summary: The study demonstrates that CD4 can form dimeric structures in solution, and this association is reversible, resembling crystal-like binding. Through variable temperature SAXS experiments, the disruption of CD4 dimerization was achieved by D4-D4 interactions and small molecules binding to the D1 domain. The systematic communication network across the structural length of sCD4 senses self and other molecule binding, providing insights for developing CD4-reactive immunosuppressive agents.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2021)
Article
Multidisciplinary Sciences
Enzo Bresteau, Nadia Elkhatib, Francesco Baschieri, Karen Bellec, Melanie Guerin, Guillaume Montagnac
Summary: This study reveals that tubular clathrin/AP-2 lattices (TCALs) play a mechanical role in controlling directed cell migration along fibers decorated with specific ligands in three-dimensional environments. The mechanism involves increasing local forces on ligand-decorated fibers, which is dependent on the ligand's receptors but does not require signaling events to occur. This preferential accumulation of TCALs along ligand-decorated fibers results in asymmetric force distribution that guides cell migration in 3D environments.
Article
Biochemical Research Methods
Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang
Summary: In this study, the protein-ligand interactions in monomeric and quaternary structures were compared using molecular docking experiments and binding free energy estimations. The results showed that ligands in quaternary structures can simultaneously interact with multiple protein chains, and quaternary structures have lower binding free energy and more accurate ligand conformations compared to monomeric structures. Therefore, it is recommended to use quaternary structures in future studies on protein-ligand interactions.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
(2022)
Article
Cell Biology
Zhenghao Wu, Zhuoshuo Xu, Xiaoqi Zhou, Heli Li, Liang Zhao, Yibing Lv, Yanyan Guo, Guanxin Shen, Yong He, Ping Lei
Summary: This study demonstrates that sGRP78 mediates inflammation resolution by promoting LPS endocytosis and autophagy-dependent degradation of TLR4. This provides innovative mechanisms for endotoxin clearance and immune regulation.
CELL DEATH & DISEASE
(2022)
Article
Chemistry, Multidisciplinary
Phillip Zhu, Stanislau Stanisheuski, Rachel Franklin, Amber Vogel, Cat Hoang Vesely, Patrick Reardon, Nikolai N. Sluchanko, Joseph S. Beckman, P. Andrew Karplus, Ryan A. Mehl, Richard B. Cooley
Summary: 14-3-3 proteins dimerize and bind phosphorylated clients to regulate their function. By introducing stable mimics of phosphorylated amino acids, researchers can study 14-3-3 function effectively. In this study, the authors improved a previous genetic code expansion system to incorporate nonhydrolyzable phosphoserine into proteins. They successfully produced biologically relevant proteins with the modified amino acid and investigated the effects of phosphorylation on protein interactions and function.
ACS CENTRAL SCIENCE
(2023)
Article
Biochemistry & Molecular Biology
Laura Bracun, Atsushi Yamagata, Bern M. Christianson, Mikako Shirouzu, Lu-Ning Liu
Summary: In this study, the structure of RC-LH1 supercomplex from purple photosynthetic bacteria Rhodobacter capsulatus is reported using cryo-EM. The RC-LH1 complexes in Rba. capsulatus are exclusively monomers surrounded by a LH1 ring. Insertion of transmembrane polypeptide PufX leads to a large opening within the LH1 ring. Comparison of PufX from different Rhodobacter species reveals the important residues involved in RC-LH1 dimerization.
Article
Multidisciplinary Sciences
Nina Romantini, Shahidul Alam, Stefanie Dobitz, Martin Spillmann, Martina De Foresta, Roger Schibli, Gebhard F. X. Schertler, Helma Wennemers, Xavier Deupi, Martin Behe, Philipp Berger
Summary: This study demonstrates that using rigid oligoproline backbones can develop ligands with biased GPCR signaling, and stabilizing GPCR dimers by fixing the distance between their recognition motifs can expand the space for medicinal chemistry.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Chemistry, Inorganic & Nuclear
Liton Seikh, Sanchaita Dey, Suman Dhara, Aditi Singh, Goutam Kumar Lahiri
Summary: This article investigates the stabilization of metal-to-ligand charge transfer excited states on coordination of azocoupled bmpd(L4) to Ru(acac)(2) unit. The study includes mononuclear Ru-II(acac)(2)(L4) and diastereomeric dinuclear (acac)(2)Ru-2.5(mu-L4(center dot-))Ru-2.5(acac)(2) complexes, as well as the development of L4(center dot-) bridged isovalent higher analogue and the exclusive product formed by electronically and sterically permuted bimpd.
INORGANIC CHEMISTRY
(2022)
Article
Hematology
Foteini-Nafsika Damaskinaki, Natalie J. Jooss, Eleyna M. Martin, Joanne C. Clark, Mark R. Thomas, Natalie S. Poulter, Jonas Emsley, Barrie Kellam, Steve P. Watson, Alexandre Slater
Summary: This study investigates the binding sites of three high-affinity nanobodies, Nb2, Nb21, and Nb35, on the platelet-signaling receptor GPVI. The researchers found that all three nanobodies can bind to the D1 domain of GPVI and inhibit collagen-induced GPVI signaling. They also identified common target residues, Arg46, Tyr47, and Ala57, on GPVI for these nanobodies. Additionally, the study negates the idea that GPVI dimerization induces a conformational change required for ligand binding.
JOURNAL OF THROMBOSIS AND HAEMOSTASIS
(2023)
Article
Multidisciplinary Sciences
Maria Kowalski-Jahn, Hannes Schihada, Ainoleena Turku, Thomas Huber, Thomas P. Sakmar, Gunnar Schulte
Summary: The study explores the conformational effects of different WNT proteins on FZD receptors, revealing that CRD dynamics are not essential for WNT/beta-catenin signaling.
Article
Optics
Sanjay Debnath, Emroz Khan, Evgenii E. Narimanov
Summary: Ghost waves, a special class of nonuniform waves in biaxial dielectric media, can lead to exact frequency degeneracies in guided modes, offering a new way of controlling mode interactions with a broad range of potential applications, from integrated wave-guides to nonlinear optics and optical sensing.
Article
Multidisciplinary Sciences
Gyunghee Jo, Jeomil Bae, Ho Jeong Hong, Ah-reum Han, Do-Kyun Kim, Seon Pyo Hong, Jung A. Kim, Sangkyu Lee, Gou Young Koh, Ho Min Kim
Summary: Angiopoietin (Angpt)-Tie receptor 2 (Tie2) plays a key role in regulating vascular stability and is a potential therapeutic target in vascular diseases. A new Tie2-agonistic antibody has been developed, targeting a site distinct from the Angpt1-binding site, influencing Tie2 clustering and activation in an Angpt2 inhibition-resistant manner.
NATURE COMMUNICATIONS
(2021)
Review
Biochemistry & Molecular Biology
Laura E. Kilpatrick, Stephen J. Hill
Summary: Some G protein-coupled receptors (GPCRs) are not evenly expressed within the plasma membrane but may form distinct signaling microdomains, localizing GPCRs in close proximity with other membrane proteins and intracellular signaling partners. Techniques like fluorescence correlation spectroscopy (FCS) are needed for probing the molecular mechanisms governing GPCR pharmacology within these domains.
BIOCHEMICAL SOCIETY TRANSACTIONS
(2021)
Article
Nanoscience & Nanotechnology
Paul Le Floch, Shi Meixuanzi, Jingda Tang, Junjie Lou, Zhigang Suo
ACS APPLIED MATERIALS & INTERFACES
(2018)
Article
Nanoscience & Nanotechnology
Tetsu Ouchi, Jiawei Yang, Zhigang Suo, Ryan C. Hayward
ACS APPLIED MATERIALS & INTERFACES
(2018)
Article
Chemistry, Multidisciplinary
Philipp Rothemund, Xavier P. Morelle, Kun Jia, George M. Whitesides, Zhigang Suo
ADVANCED FUNCTIONAL MATERIALS
(2018)
Article
Chemistry, Multidisciplinary
Xavier P. Morelle, Widusha R. Illeperuma, Kevin Tian, Ruobing Bai, Zhigang Suo, Joost J. Vlassak
ADVANCED MATERIALS
(2018)
Article
Chemistry, Multidisciplinary
Meng Qin, Mo Sun, Ruobing Bai, Yiqi Mao, Xiaoshi Qian, Dipika Sikka, Yuan Zhao, Hang Jerry Qi, Zhigang Suo, Ximin He
ADVANCED MATERIALS
(2018)
Article
Chemistry, Multidisciplinary
Jiawei Yang, Ruobing Bai, Zhigang Suo
ADVANCED MATERIALS
(2018)
Article
Chemistry, Physical
Enrui Zhang, Ruobing Bai, Xavier P. Morelle, Zhigang Suo
Article
Multidisciplinary Sciences
Qihan Liu, Guodong Nian, Canhui Yang, Shaoxing Qu, Zhigang Suo
NATURE COMMUNICATIONS
(2018)
Article
Polymer Science
Ruobing Bai, Jiawei Yang, Xavier P. Morelle, Canhui Yang, Zhigang Suo
Review
Nanoscience & Nanotechnology
Canhui Yang, Zhigang Suo
NATURE REVIEWS MATERIALS
(2018)
Article
Chemistry, Multidisciplinary
Mo Sun, Ruobing Bai, Xingyun Yang, Jiaqi Song, Meng Qin, Zhigang Suo, Ximin He
ADVANCED MATERIALS
(2018)
Article
Chemistry, Physical
Anesia Auguste, Jiawei Yang, Lihua Jin, Dayong Chen, Zhigang Suo, Ryan C. Hayward
Article
Chemistry, Physical
Philipp Rothemund, Carleen Morris Bowers, Zhigang Suo, George M. Whitesides
CHEMISTRY OF MATERIALS
(2018)
Article
Robotics
Philipp Rothemund, Alar Ainla, Lee Belding, Daniel J. Preston, Sarah Kurihara, Zhigang Suo, George M. Whitesides
Article
Materials Science, Multidisciplinary
Charles Hamilton, Kevin Tian, Jinhye Bae, Canhui Yang, Gursel Alici, Geoffrey M. Spinks, Zhigang Suo, Joost J. Vlassak, Marc In Het Panhuis