Studying protein–protein affinity and immobilized ligand–protein affinity interactions using MS-based methods

Identification of differential protein interactors of lamin A and progerin

(2014) Nard Kubben et al.   Nucleus

Revealing the Quaternary Structure of a Heterogeneous Noncovalent Protein Complex through Surface-Induced Dissociation

(2011) Anne E. Blackwell et al.   ANALYTICAL CHEMISTRY

Assembly states of the nucleosome assembly protein 1 (NAP-1) revealed by sedimentation velocity and non-denaturing MS

(2011) Masanori Noda et al.   BIOCHEMICAL JOURNAL

Solution NMR spectroscopy of supra-molecular systems, why bother? A methyl-TROSY view

(2011) Lewis E. Kay   JOURNAL OF MAGNETIC RESONANCE

Efficient detection of RNA-protein interactions using tethered RNAs

(2011) H. Iioka et al.   NUCLEIC ACIDS RESEARCH

Tandem affinity purification and identification of the human TSC1 protein complex

(2010) Longhua Guo et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Recent developments in protein–ligand affinity mass spectrometry

(2010) Niels Jonker et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Investigation of protein–protein interactions in living cells by chemical crosslinking and mass spectrometry

(2010) Andrea Sinz   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Combination of Noncovalent Mass Spectrometry and Traveling Wave Ion Mobility Spectrometry Reveals Sugar-Induced Conformational Changes of Central Glycolytic Genes Repressor/DNA Complex

(2010) Cédric Atmanene et al.   ANALYTICAL CHEMISTRY

Ion Mobility-Mass Spectrometry Reveals the Influence of Subunit Packing and Charge on the Dissociation of Multiprotein Complexes

(2010) Elisabetta Boeri Erba et al.   ANALYTICAL CHEMISTRY

Molecular interaction between HAX-1 and XIAP inhibits apoptosis

(2010) Young Ji Kang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Chemical affinity matrix-based identification of prohibitin as a binding protein to anti-resorptive sulfonyl amidine compounds

(2010) Sung-Youn Chang et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Sphingosine Kinase Interacting Protein is an A-Kinase Anchoring Protein Specific for Type I cAMP-Dependent Protein Kinase

(2010) Duangnapa Kovanich  et al.   CHEMBIOCHEM

Chemical Proteomics Identifies Nampt as the Target of CB30865, An Orphan Cytotoxic Compound

(2010) Tracey C. Fleischer et al.   CHEMISTRY & BIOLOGY

Analysis of NF-κB signaling pathways by proteomic approaches

(2010) Ellen Niederberger et al.   Expert Review of Proteomics

Genetic Incorporation of a Photo-Crosslinkable Amino Acid Reveals Novel Protein Complexes with GRB2 in Mammalian Cells

(2010) Nobumasa Hino et al.   JOURNAL OF MOLECULAR BIOLOGY

Muscarinic receptor family interacting proteins: Role in receptor function

(2010) Dasiel O. Borroto-Escuela et al.   JOURNAL OF NEUROSCIENCE METHODS

Identification of ΔNp63α Protein Interactions by Mass Spectrometry

(2010) Angela Amoresano et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Phosphorylation-Dependent Interaction Partners of the Adapter Protein ADAP using Quantitative Mass Spectrometry: SILAC vs18O-Labeling

(2010) Sabine Lange et al.   JOURNAL OF PROTEOME RESEARCH

Current limitations in native mass spectrometry based structural biology

(2010) Esther Duijn   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Purification and characterization of HIV–human protein complexes

(2010) Stefanie Jäger et al.   METHODS

Extracting gene function from protein–protein interactions using Quantitative BAC InteraCtomics (QUBIC)

(2010) Nina C. Hubner et al.   METHODS

Norwalk Virus Assembly and Stability Monitored by Mass Spectrometry

(2010) Glen K. Shoemaker et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass Spectrometry Defines the Stoichiometry of Ribosomal Stalk Complexes across the Phylogenetic Tree

(2010) Yuliya Gordiyenko et al.   MOLECULAR & CELLULAR PROTEOMICS

The proteasome antechamber maintains substrates in an unfolded state

(2010) Amy M. Ruschak et al.   NATURE

Mass Spectrometric Analysis of Intact Human Monoclonal Antibody Aggregates Fractionated by Size-Exclusion Chromatography

(2010) Başak Kükrer et al.   PHARMACEUTICAL RESEARCH

Protein interactions with the platelet integrin αIIb regulatory motif

(2010) Markus Raab et al.   PROTEOMICS

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

(2010) Roberta Tarallo et al.   PROTEOMICS

Determining the topology of virus assembly intermediates using ion mobility spectrometry-mass spectrometry

(2010) Tom W. Knapman et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

When proteomics meets structural biology

(2010) Min Zhou et al.   TRENDS IN BIOCHEMICAL SCIENCES

Hyphenation of Surface Plasmon Resonance Imaging to Matrix-Assisted Laser Desorption Ionization Mass Spectrometry by On-Chip Mass Spectrometry and Tandem Mass Spectrometry Analysis

(2009) S. Bellon et al.   ANALYTICAL CHEMISTRY

Identification of proteins interacting with GTP cyclohydrolase I

(2009) Jianhai Du et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Ion mobility mass spectrometry of proteins and proteinassemblies

(2009) Charlotte Uetrecht et al.   CHEMICAL SOCIETY REVIEWS

Revealing promiscuous drug–target interactions by chemical proteomics

(2009) Marcus Bantscheff et al.   DRUG DISCOVERY TODAY

Integration of on-line protein digestion by trypsin in CZE by means of electrophoretically mediated microanalysis

(2009) Marta Zeisbergerová et al.   ELECTROPHORESIS

New dimensions in the study of protein complexes using quantitative mass spectrometry

(2009) Silke Oeljeklaus et al.   FEBS LETTERS

Integrated protein analysis platform based on column switch recycling size exclusion chromatography, microenzymatic reactor and μRPLC–ESI-MS/MS

(2009) Huiming Yuan et al.   JOURNAL OF CHROMATOGRAPHY A

Total on-line analysis of a target protein from plasma by immunoextraction, digestion and liquid chromatography–mass spectrometry

(2009) A. Cingöz et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Label-free determination of protein-ligand binding constants using mass spectrometry and validation using surface plasmon resonance and isothermal titration calorimetry

(2009) Matthias C. Jecklin et al.   JOURNAL OF MOLECULAR RECOGNITION

Detection and Identification of Bioanalytes with High Resolution LSPR Spectroscopy and MALDI Mass Spectrometry

(2009) Jeffrey N. Anker et al.   Journal of Physical Chemistry C

Comparative Interactomics: Analysis ofArabidopsis14-3-3 Complexes Reveals Highly Conserved 14-3-3 Interactions between Humans and Plants

(2009) Anna-Lisa Paul et al.   JOURNAL OF PROTEOME RESEARCH

PI(3,4,5)P3 Interactome

(2009) Bruno Catimel et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Analysis of an α7 Nicotinic Acetylcholine Receptor Interactome

(2009) Joao A. Paulo et al.   JOURNAL OF PROTEOME RESEARCH

18O2-Labeling in Quantitative Proteomic Strategies: A Status Report

(2009) Catherine Fenselau et al.   JOURNAL OF PROTEOME RESEARCH

GDP-Capture Compound — A novel tool for the profiling of GTPases in pro- and eukaryotes by capture compound mass spectrometry (CCMS)

(2009) Yan Luo et al.   Journal of Proteomics

On-line multi-enzymatic approach for improved sequence coverage in protein analysis

(2009) Caterina Temporini et al.   JOURNAL OF SEPARATION SCIENCE

Identifying nonspecific ligand binding in electrospray ionization mass spectrometry using the reporter molecule method

(2009) Nian Sun et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Detection of nucleic acid-nuclear hormone receptor complexes with mass spectrometry

(2009) Claudia Bich et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO-406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells

(2009) U Rix et al.   LEUKEMIA

In-depth Qualitative and Quantitative Profiling of Tyrosine Phosphorylation Using a Combination of Phosphopeptide Immunoaffinity Purification and Stable Isotope Dimethyl Labeling

(2009) Paul J. Boersema et al.   MOLECULAR & CELLULAR PROTEOMICS

A chemical proteomics based enrichment technique targeting the interactome of the PDE5 inhibitor PF-4540124

(2009) Poupak Dadvar et al.   Molecular BioSystems

Target profiling of small molecules by chemical proteomics

(2009) Uwe Rix et al.   Nature Chemical Biology

Proteomics strategy for quantitative protein interaction profiling in cell extracts

(2009) Kirti Sharma et al.   NATURE METHODS

Protein-Protein Interactions of Tandem Affinity Purified Protein Kinases from Rice

(2009) Jai S. Rohila et al.   PLoS One

Capture Compound Mass Spectrometry Sheds Light on the Molecular Mechanisms of Liver Toxicity of Two Parkinson Drugs

(2009) Jenny J. Fischer et al.   TOXICOLOGICAL SCIENCES

Identification of Proteins Targeted by the Thioredoxin Superfamily in Plasmodium falciparum

(2009) Nicole Sturm et al.   PLoS Pathogens

On-line Digestion System for Protein Characterization and Proteome Analysis

(2008) Daniel López-Ferrer et al.   ANALYTICAL CHEMISTRY

Nanoscale Affinity Chip Interface for Coupling Inhibition SPR Immunosensor Screening with Nano-LC TOF MS

(2008) G. R. Marchesini et al.   ANALYTICAL CHEMISTRY

G-protein-coupled receptor-associated A-kinase anchoring proteins AKAP5 and AKAP12: Differential trafficking and distribution

(2008) M CHEN et al.   CELLULAR SIGNALLING

Immobilized metal affinity chromatography of histidine-tagged lentiviral vectors using monolithic adsorbents

(2008) M.C. Cheeks et al.   JOURNAL OF CHROMATOGRAPHY A

Development of an automated on-line pepsin digestion–liquid chromatography–tandem mass spectrometry configuration for the rapid analysis of protein adducts of chemical warfare agents

(2008) Jeroen Carol-Visser et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Ion mobility–mass spectrometry analysis of large protein complexes

(2008) Brandon T Ruotolo et al.   Nature Protocols

High-resolution mass spectrometry of viral assemblies: Molecular composition and stability of dimorphic hepatitis B virus capsids

(2008) C. Uetrecht et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An integrated high-performance liquid chromatography–mass spectrometry system for the activity-dependent analysis of matrix metalloproteases

(2007) Robert Freije et al.   JOURNAL OF CHROMATOGRAPHY A

Trypsin immobilization on three monolithic disks for on-line protein digestion

(2007) R. Nicoli et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS