Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA

Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification

(2011) P. R. Steele et al.   AMERICAN JOURNAL OF BOTANY

Chloroplast microsatellite primers for cacao (Theobroma cacao ) and other Malvaceae

(2011) Ji Y. Yang et al.   AMERICAN JOURNAL OF BOTANY

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Evolution of the nuclear ribosomal DNA intergenic spacer in four species of the Daphnia pulex complex

(2011) Cheryl D Ambrose et al.   BMC GENETICS

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

(2011) Shannon CK Straub et al.   BMC GENOMICS

The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies

(2011) L. Doorduin et al.   DNA RESEARCH

and D do not replace FST

(2011) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY

DNA barcodes for Mexican Cactaceae, plants under pressure from wild collecting

(2011) CHRIS YESSON et al.   Molecular Ecology Resources

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

Influence of mutation rate on estimators of genetic differentiation - lessons from Arabidopsis thaliana

(2010) Ilkka Kronholm et al.   BMC GENETICS

An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database)

(2010) Shao-Ke Lou et al.   BMC GENOMICS

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?

(2010) Kyle G. Dexter et al.   ECOLOGICAL MONOGRAPHS

The support of meat value chains by genetic technologies

(2010) Andrzej A. Sosnicki et al.   MEAT SCIENCE

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines

(2010) J. B. WHITTALL et al.   MOLECULAR ECOLOGY

Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome

(2010) HANNES DEMPEWOLF et al.   Molecular Ecology Resources

Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity

(2010) ROBERTA PIREDDA et al.   Molecular Ecology Resources

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

Chloroplast genome sequences from total DNA for plant identification

(2010) Catherine J. Nock et al.   PLANT BIOTECHNOLOGY JOURNAL

Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals

(2010) Hui Yao et al.   PLoS One

Ethnobotany genomics - discovery and innovation in a new era of exploratory research

(2010) Steven G Newmaster et al.   Journal of Ethnobiology and Ethnomedicine

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genetic diversity and geographic structure in Aglaia elaeagnoidea (Meliaceae, Sapindales), a morphologically complex tree species, near the two extremes of its distribution

(2009) A.N. Muellner et al.   BLUMEA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach

(2009) Gianmarco Ferri et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

A Grass Molecular Identification System for Forensic Botany: A Critical Evaluation of the Strengths and Limitations

(2009) Jodie Ward et al.   JOURNAL OF FORENSIC SCIENCES

DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India

(2009) SUBRAMANYAM RAGUPATHY et al.   Molecular Ecology Resources

DNA Barcoding-a Windfall for Tropical Biology?

(2008) W. John Kress et al.   BIOTROPICA

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Botany without borders: barcoding in focus

(2008) NOLAN C. KANE et al.   MOLECULAR ECOLOGY

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

(2008) Richard Cronn et al.   NUCLEIC ACIDS RESEARCH

Conservation of tree species through sustainable use: how can it be achieved in practice?

(2008) Adrian C. Newton   ORYX

Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)

(2008) Juan C. Motamayor et al.   PLoS One

Increasing Accuracy and Throughput in Large-Scale Microsatellite Fingerprinting of Cacao Field Germplasm Collections

(2008) Lambert A. Motilal et al.   Tropical Plant Biology