Extracting physical chemistry from mechanics: a new approach to investigate DNA interactions with drugs and proteins in single molecule experiments
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Title
Extracting physical chemistry from mechanics: a new approach to investigate DNA interactions with drugs and proteins in single molecule experiments
Authors
Keywords
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Journal
Integrative Biology
Volume 7, Issue 9, Pages 967-986
Publisher
Royal Society of Chemistry (RSC)
Online
2015-08-06
DOI
10.1039/c5ib00127g
References
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Related references
Note: Only part of the references are listed.- Force-dependent persistence length of DNA–intercalator complexes measured in single molecule stretching experiments
- (2015) R. F. Bazoni et al. Soft Matter
- Determination of the elastic properties of short ssDNA molecules by mechanically folding and unfolding DNA hairpins
- (2014) Anna Alemany et al. BIOPOLYMERS
- Optical Tweezers Analysis of DNA–Protein Complexes
- (2014) Iddo Heller et al. CHEMICAL REVIEWS
- Characterizing the interaction between DNA and GelRed fluorescent stain
- (2014) F. A. P. Crisafuli et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- On the Effects of Intercalators in DNA Condensation: A Force Spectroscopy and Gel Electrophoresis Study
- (2014) M. S. Rocha et al. JOURNAL OF PHYSICAL CHEMISTRY B
- New Insights into the Mechanism of the DNA/Doxorubicin Interaction
- (2014) Cristina Pérez-Arnaiz et al. JOURNAL OF PHYSICAL CHEMISTRY B
- DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin
- (2014) Divakaran Murugesapillai et al. NUCLEIC ACIDS RESEARCH
- Fluctuations in the DNA double helix: A critical review
- (2014) Maxim D. Frank-Kamenetskii et al. Physics of Life Reviews
- Electrostatic Binding and Hydrophobic Collapse of Peptide–Nucleic Acid Aggregates Quantified Using Force Spectroscopy
- (2013) Joan Camunas-Soler et al. ACS Nano
- Advances in magnetic tweezers for single molecule and cell biophysics
- (2013) Devrim Kilinc et al. Integrative Biology
- DNA Interaction with Hoechst 33258: Stretching Experiments Decouple the Different Binding Modes
- (2013) E. F. Silva et al. JOURNAL OF PHYSICAL CHEMISTRY B
- DNA Interaction with Diaminobenzidine Studied with Optical Tweezers and Dynamic Light Scattering
- (2013) L. A. Reis et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Oligomerization transforms human APOBEC3G from an efficient enzyme to a slowly dissociating nucleic acid-binding protein
- (2013) Kathy R. Chaurasiya et al. Nature Chemistry
- Amplified stretch of bottlebrush-coated DNA in nanofluidic channels
- (2013) C. Zhang et al. NUCLEIC ACIDS RESEARCH
- Strong bending of the DNA double helix
- (2013) A. Vologodskii et al. NUCLEIC ACIDS RESEARCH
- DNA interaction with Actinomycin D: mechanical measurements reveal the details of the binding data
- (2013) E. C. Cesconetto et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy
- (2013) G. A. King et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA-intercalator interactions: structural and physical analysis using atomic force microscopy in solution
- (2013) M. Maaloum et al. Soft Matter
- Recent Advances in Magnetic Tweezers
- (2012) Iwijn De Vlaminck et al. Annual Review of Biophysics
- DNA-cisplatin binding mechanism peculiarities studied with single molecule stretching experiments
- (2012) F. A. P. Crisafuli et al. APPLIED PHYSICS LETTERS
- Recent developments in single-molecule DNA mechanics
- (2012) Zev Bryant et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- DNA–cisplatin interaction studied with single molecule stretching experiments
- (2012) F. A. P. Crisafuli et al. Integrative Biology
- Single-molecule kinetics reveal microscopic mechanism by which High-Mobility Group B proteins alter DNA flexibility
- (2012) Micah J. McCauley et al. NUCLEIC ACIDS RESEARCH
- Force spectroscopy reveals the DNA structural dynamics that govern the slow binding of Actinomycin D
- (2012) Thayaparan Paramanathan et al. NUCLEIC ACIDS RESEARCH
- Quantitative Assessment of the Interplay Between DNA Elasticity and Cooperative Binding of Ligands
- (2012) L. Siman et al. PHYSICAL REVIEW LETTERS
- The Influence of Solutes on the Enthalpy/Entropy Change of the Actinomycin D Binding to DNA: Hydration, Energy Compensation and Long-Range Deformation on DNA
- (2011) André L. Galo et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Natural product DNA major groove binders
- (2011) Paris L. Hamilton et al. NATURAL PRODUCT REPORTS
- Gene therapy finds its niche
- (2011) Cormac Sheridan NATURE BIOTECHNOLOGY
- Atomic force microscopy study of DNA conformation in the presence of drugs
- (2010) Valeria Cassina et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Torsional Mechanics of DNA Are Regulated by Small-Molecule Intercalation
- (2010) Alfredo Celedon et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Compaction of DNA Induced by Like-Charge Protein: Opposite Salt-Effect against the Polymer-Salt-Induced Condensation with Neutral Polymer
- (2010) Kenichi Yoshikawa et al. Journal of Physical Chemistry Letters
- Temperature dependence of DNA persistence length
- (2010) Stephanie Geggier et al. NUCLEIC ACIDS RESEARCH
- Torsional sensing of small-molecule binding using magnetic tweezers
- (2010) J. Lipfert et al. NUCLEIC ACIDS RESEARCH
- Mechanical and structural properties of YOYO-1 complexed DNA
- (2010) K. Gunther et al. NUCLEIC ACIDS RESEARCH
- Magnetic tweezers measurements of the nanomechanical properties of DNA in the presence of drugs
- (2010) D. Salerno et al. NUCLEIC ACIDS RESEARCH
- Biophysical characterization of DNA binding from single molecule force measurements
- (2010) Kathy R. Chaurasiya et al. Physics of Life Reviews
- Sequence dependence of DNA bending rigidity
- (2010) S. Geggier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Optical tweezers for undergraduates: Theoretical analysis and experiments
- (2009) M. S. Rocha AMERICAN JOURNAL OF PHYSICS
- DNA-psoralen: Single-molecule experiments and first principles calculations
- (2009) M. S. Rocha et al. APPLIED PHYSICS LETTERS
- Interaction of Oxazole Yellow Dyes with DNA Studied with Hybrid Optical Tweezers and Fluorescence Microscopy
- (2009) C.U. Murade et al. BIOPHYSICAL JOURNAL
- Binding Kinetics of Bisintercalator Triostin A with Optical Tweezers Force Mechanics
- (2009) Christoph Kleimann et al. BIOPHYSICAL JOURNAL
- Quantitative Modeling and Optimization of Magnetic Tweezers
- (2009) Jan Lipfert et al. BIOPHYSICAL JOURNAL
- Revisiting the neighbor exclusion model and its applications
- (2009) Marcio S. Rocha BIOPOLYMERS
- Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation
- (2009) M Manosas et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes
- (2009) A Mossa et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Theoretical models of DNA topology simplification by type IIA DNA topoisomerases
- (2009) Alexander Vologodskii NUCLEIC ACIDS RESEARCH
- Cisplatin induces loop structures and condensation of single DNA molecules
- (2009) X.-M. Hou et al. NUCLEIC ACIDS RESEARCH
- Investigation of the elasticity of a cisplatin-DNA adduct via single-molecule measurements and bimodal modeling
- (2009) Nam-Kyung Lee et al. PHYSICAL REVIEW E
- Statistical Properties of Metastable Intermediates in DNA Unzipping
- (2009) J. M. Huguet et al. PHYSICAL REVIEW LETTERS
- Peeling back the mystery of DNA overstretching
- (2009) M. C. Williams et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging
- (2009) J. van Mameren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recent Advances in Optical Tweezers
- (2008) Jeffrey R. Moffitt et al. Annual Review of Biochemistry
- Optical tweezers experiments resolve distinct modes of DNA-protein binding
- (2008) Micah J. McCauley et al. BIOPOLYMERS
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- Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy
- (2008) Keir C Neuman et al. NATURE METHODS
- Model of DNA Bending by Cooperative Binding of Proteins
- (2008) S. M. Rappaport et al. PHYSICAL REVIEW LETTERS
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