Single-molecule kinetics reveal microscopic mechanism by which High-Mobility Group B proteins alter DNA flexibility

Force spectroscopy reveals the DNA structural dynamics that govern the slow binding of Actinomycin D

(2012) Thayaparan Paramanathan et al.   NUCLEIC ACIDS RESEARCH

Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tension induces a base-paired overstretched DNA conformation

(2012) N. Bosaeus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PicoNewton-Millisecond Force Steps Reveal the Transition Kinetics and Mechanism of the Double-Stranded DNA Elongation

(2011) Pasquale Bianco et al.   BIOPHYSICAL JOURNAL

Understanding Apparent DNA Flexibility Enhancement by HU and HMGB Architectural Proteins

(2011) Luke Czapla et al.   JOURNAL OF MOLECULAR BIOLOGY

Basic N-Terminus of Yeast Nhp6A Regulates the Mechanism of Its DNA Flexibility Enhancement

(2011) Jingyun Zhang et al.   JOURNAL OF MOLECULAR BIOLOGY

Overstretching DNA at 65 pN Does Not Require Peeling from Free Ends or Nicks

(2011) D. Hern Paik et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation

(2011) Botao Xiao et al.   NUCLEIC ACIDS RESEARCH

HMGB proteins: Interactions with DNA and chromatin

(2010) Michal Štros   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

HMGB1: Roles in base excision repair and related function

(2010) Yuan Liu et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Structural Analysis of HMGD–DNA Complexes Reveals Influence of Intercalation on Sequence Selectivity and DNA Bending

(2010) Mair E.A. Churchill et al.   JOURNAL OF MOLECULAR BIOLOGY

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching

(2010) Hongxia Fu et al.   NUCLEIC ACIDS RESEARCH

Modulation of HU–DNA interactions by salt concentration and applied force

(2010) Botao Xiao et al.   NUCLEIC ACIDS RESEARCH

Interpreting protein/DNA interactions: distinguishing specific from non-specific and electrostatic from non-electrostatic components

(2010) P. L. Privalov et al.   NUCLEIC ACIDS RESEARCH

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

(2010) J. S. Graham et al.   NUCLEIC ACIDS RESEARCH

Biophysical characterization of DNA binding from single molecule force measurements

(2010) Kathy R. Chaurasiya et al.   Physics of Life Reviews

Enhancement of DNA Flexibility in Vitro and in Vivo by HMGB Box A Proteins Carrying Box B Residues†

(2009) Nadia T. Sebastian et al.   BIOCHEMISTRY

The dynamics of HMG protein–chromatin interactions in living cellsThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB’s 51st Annual Meeting – Epigenetics and Chromatin Dynamics, and has undergone the Journal’s usual peer review process.

(2009) Gabi Gerlitz et al.   Biochemistry and Cell Biology

HMGB1 loves company

(2009) Marco E. Bianchi   JOURNAL OF LEUKOCYTE BIOLOGY

Mechanism of DNA flexibility enhancement by HMGB proteins

(2009) Jingyun Zhang et al.   NUCLEIC ACIDS RESEARCH

Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging

(2009) J. van Mameren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The cost of DNA bending

(2009) Peter L. Privalov et al.   TRENDS IN BIOCHEMICAL SCIENCES

Transient HMGB protein interactions with B-DNA duplexes and complexes

(2008) Jeff Zimmerman et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DNA Overstretching in the Presence of Glyoxal: Structural Evidence of Force-Induced DNA Melting

(2008) Leila Shokri et al.   BIOPHYSICAL JOURNAL

Optical tweezers experiments resolve distinct modes of DNA-protein binding

(2008) Micah J. McCauley et al.   BIOPOLYMERS

High mobility group protein B1 enhances DNA repair and chromatin modification after DNA damage

(2008) S. S. Lange et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA