Multinucleotide mutations cause false inferences of lineage-specific positive selection
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Multinucleotide mutations cause false inferences of lineage-specific positive selection
Authors
Keywords
-
Journal
Nature Ecology & Evolution
Volume 2, Issue 8, Pages 1280-1288
Publisher
Springer Nature
Online
2018-06-29
DOI
10.1038/s41559-018-0584-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Deep sequencing of natural and experimental populations ofDrosophila melanogasterreveals biases in the spectrum of new mutations
- (2017) Zoe June Assaf et al. GENOME RESEARCH
- Experimental test and refutation of a classic case of molecular adaptation in Drosophila melanogaster
- (2017) Mohammad A. Siddiq et al. Nature Ecology & Evolution
- Evolutionary switches between two serine codon sets are driven by selection
- (2016) Igor B. Rogozin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multi-nucleotide de novo Mutations in Humans
- (2016) Søren Besenbacher et al. PLoS Genetics
- Concurrent Nucleotide Substitution Mutations in the Human Genome Are Characterized by a Significantly Decreased Transition/Transversion Ratio
- (2015) Wenjuan Zhu et al. HUMAN MUTATION
- Complex Multiple-Nucleotide Substitution Mutations Causing Human Inherited Disease Reveal Novel Insights into the Action of Translesion Synthesis DNA Polymerases
- (2015) Jian-Min Chen et al. HUMAN MUTATION
- Positive Selection in CD8+T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages
- (2015) Heather M. Machkovech et al. JOURNAL OF VIROLOGY
- Gene-Wide Identification of Episodic Selection
- (2015) Ben Murrell et al. MOLECULAR BIOLOGY AND EVOLUTION
- Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
- (2015) Martin D. Smith et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome-wide patterns and properties of de novo mutations in humans
- (2015) Laurent C Francioli et al. NATURE GENETICS
- Convergent evolution of the genomes of marine mammals
- (2015) Andrew D Foote et al. NATURE GENETICS
- Evolutionary insights into host–pathogen interactions from mammalian sequence data
- (2015) Manuela Sironi et al. NATURE REVIEWS GENETICS
- Error-prone polymerase activity causes multinucleotide mutations in humans
- (2014) Kelley Harris et al. GENOME RESEARCH
- An Experimentally Determined Evolutionary Model Dramatically Improves Phylogenetic Fit
- (2014) Jesse D. Bloom MOLECULAR BIOLOGY AND EVOLUTION
- Patterns of Positive Selection in Seven Ant Genomes
- (2014) Julien Roux et al. MOLECULAR BIOLOGY AND EVOLUTION
- Escape from bacterial iron piracy through rapid evolution of transferrin
- (2014) M. F. Barber et al. SCIENCE
- A New and More Accurate Estimate of the Rate of Concurrent Tandem-Base Substitution Mutations in the Human Germline: ∼0.4% of the Single-Nucleotide Substitution Mutation Rate
- (2013) Jian-Min Chen et al. HUMAN MUTATION
- The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC
- (2013) Walid H. Gharib et al. MOLECULAR BIOLOGY AND EVOLUTION
- Dual Host-Virus Arms Races Shape an Essential Housekeeping Protein
- (2013) Ann Demogines et al. PLOS BIOLOGY
- DNA polymerase zeta generates clustered mutations during bypass of endogenous DNA lesions inSaccharomyces cerevisiae
- (2012) Jana E. Stone et al. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS
- DNA polymerase ζ generates tandem mutations in immunoglobulin variable regions
- (2012) Huseyin Saribasak et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Looking for Darwin in Genomic Sequences—Validity and Success of Statistical Methods
- (2012) Weiwei Zhai et al. MOLECULAR BIOLOGY AND EVOLUTION
- Estimating Empirical Codon Hidden Markov Models
- (2012) Nicola De Maio et al. MOLECULAR BIOLOGY AND EVOLUTION
- Convergent Evolution of Escape from Hepaciviral Antagonism in Primates
- (2012) Maulik R. Patel et al. PLOS BIOLOGY
- Detecting Individual Sites Subject to Episodic Diversifying Selection
- (2012) Ben Murrell et al. PLoS Genetics
- Pervasive Multinucleotide Mutational Events in Eukaryotes
- (2011) Daniel R. Schrider et al. CURRENT BIOLOGY
- A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection
- (2011) Sergei L. Kosakovsky Pond et al. MOLECULAR BIOLOGY AND EVOLUTION
- Variation in the mutation rate across mammalian genomes
- (2011) Alan Hodgkinson et al. NATURE REVIEWS GENETICS
- Molecular spandrels: tests of adaptation at the genetic level
- (2011) Rowan D. H. Barrett et al. NATURE REVIEWS GENETICS
- Statistical Properties of the Branch-Site Test of Positive Selection
- (2010) Z. Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Adaptive evolution of young gene duplicates in mammals
- (2009) M. V. Han et al. GENOME RESEARCH
- Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods
- (2009) Claudio Casola et al. JOURNAL OF MOLECULAR EVOLUTION
- Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates
- (2009) Hanyi Zhuang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
- (2009) M. Nozawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
- (2009) Y. F. Chan et al. SCIENCE
- False-positive results obtained from the branch-site test of positive selection
- (2008) Yoshiyuki Suzuki GENES & GENETIC SYSTEMS
- Protein kinase R reveals an evolutionary model for defeating viral mimicry
- (2008) Nels C. Elde et al. NATURE
- DNA polymerases and human disease
- (2008) Lawrence A. Loeb et al. NATURE REVIEWS GENETICS
- Low-fidelity DNA synthesis by human DNA polymerase theta
- (2008) M. E. Arana et al. NUCLEIC ACIDS RESEARCH
- Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates
- (2008) S. Yokoyama et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of protein-coding genes in Drosophila
- (2008) Amanda M. Larracuente et al. TRENDS IN GENETICS
- Patterns of Positive Selection in Six Mammalian Genomes
- (2008) Carolin Kosiol et al. PLoS Genetics
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started