Variation in the mutation rate across mammalian genomes

Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection

(2011) Netta Mendelson Cohen et al.   CELL

Pervasive Multinucleotide Mutational Events in Eukaryotes

(2011) Daniel R. Schrider et al.   CURRENT BIOLOGY

Inference of Mutation Parameters and Selective Constraint in Mammalian Coding Sequences by Approximate Bayesian Computation

(2011) P. D. Keightley et al.   GENETICS

Initial genome sequencing and analysis of multiple myeloma

(2011) Michael A. Chapman et al.   NATURE

Variation in genome-wide mutation rates within and between human families

(2011) Donald F Conrad et al.   NATURE GENETICS

Exploring the Genomes of Cancer Cells: Progress and Promise

(2011) M. R. Stratton   SCIENCE

Clusters of Nucleotide Substitutions and Insertion/Deletion Mutations Are Associated with Repeat Sequences

(2011) Michael J. McDonald et al.   PLOS BIOLOGY

A genome-wide view of mutation rate co-variation using multivariate analyses

(2011) Guruprasad Ananda et al.   GENOME BIOLOGY

Context dependent substitution biases vary within the human genome

(2010) P Andrew Nevarez et al.   BMC BIOINFORMATICS

The Genomic Distribution and Local Context of Coincident SNPs in Human and Chimpanzee

(2010) Alan Hodgkinson et al.   Genome Biology and Evolution

Massive turnover of functional sequence in human and other mammalian genomes

(2010) S. Meader et al.   GENOME RESEARCH

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

(2010) C. L. Chen et al.   GENOME RESEARCH

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

(2010) A. P. Boyle et al.   GENOME RESEARCH

Mutation Biases and Mutation Rate Variation Around Very Short Human Microsatellites Revealed by Human–Chimpanzee–Orangutan Genomic Sequence Alignments

(2010) William Amos   JOURNAL OF MOLECULAR EVOLUTION

The Positive Correlation between dN/dS and dS in Mammals Is Due to Runs of Adjacent Substitutions

(2010) Nina Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The mutation spectrum revealed by paired genome sequences from a lung cancer patient

(2010) William Lee et al.   NATURE

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Insertion and Deletion Processes in Recent Human History

(2010) Per Sjödin et al.   PLoS One

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Weak preservation of local neutral substitution rates across mammalian genomes

(2009) Hideo Imamura et al.   BMC EVOLUTIONARY BIOLOGY

Human Triallelic Sites: Evidence for a New Mutational Mechanism?

(2009) A. Hodgkinson et al.   GENETICS

Evidence That Replication-Associated Mutation Alone Does Not Explain Between-Chromosome Differences In Substitution Rates

(2009) Catherine J. Pink et al.   Genome Biology and Evolution

Single nucleotide differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies

(2009) Lucia Musumeci et al.   HUMAN MUTATION

Indel-Associated Mutation Rate Varies with Mating System in Flowering Plants

(2009) J. D. Hollister et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence that Localized Variation in Primate Sequence Divergence Arises from an Influence of Nucleosome Placement on DNA Repair

(2009) H. Ying et al.   MOLECULAR BIOLOGY AND EVOLUTION

Timing of Replication Is a Determinant of Neutral Substitution Rates but Does Not Explain Slow Y Chromosome Evolution in Rodents

(2009) C. J. Pink et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomewide Association between Insertions/Deletions and the Nucleotide Diversity in Bacteria

(2009) L. Zhu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distributions of Selectively Constrained Sites and Deleterious Mutation Rates in the Hominid and Murid Genomes

(2009) L. Eory et al.   MOLECULAR BIOLOGY AND EVOLUTION

A small-cell lung cancer genome with complex signatures of tobacco exposure

(2009) Erin D. Pleasance et al.   NATURE

A comprehensive catalogue of somatic mutations from a human cancer genome

(2009) Erin D. Pleasance et al.   NATURE

Human mutation rate associated with DNA replication timing

(2009) John A Stamatoyannopoulos et al.   NATURE GENETICS

Cryptic Variation in the Human Mutation Rate

(2009) Alan Hodgkinson et al.   PLOS BIOLOGY

Widespread Genomic Signatures of Natural Selection in Hominid Evolution

(2009) Graham McVicker et al.   PLoS Genetics

Estimating the Per-Base-Pair Mutation Rate in the Yeast Saccharomyces cerevisiae

(2008) Gregory I. Lang et al.   GENETICS

CpG dinucleotides and the mutation rate of non-CpG DNA

(2008) J.-C. Walser et al.   GENOME RESEARCH

Transcription induces strand-specific mutations at the 5' end of human genes

(2008) P. Polak et al.   GENOME RESEARCH

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes

(2008) Dacheng Tian et al.   NATURE

Transcription-coupled DNA repair: two decades of progress and surprises

(2008) Philip C. Hanawalt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses

(2008) S. Jones et al.   SCIENCE

An Integrated Genomic Analysis of Human Glioblastoma Multiforme

(2008) D. W. Parsons et al.   SCIENCE

Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation

(2008) Navin Elango et al.   PLoS Computational Biology

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

(2008) Laurent Duret et al.   PLoS Genetics

Human-macaque comparisons illuminate variation in neutral substitution rates

(2008) Svitlana Tyekucheva et al.   GENOME BIOLOGY