Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits
Authors
Keywords
-
Journal
Royal Society Open Science
Volume 5, Issue 3, Pages 172234
Publisher
The Royal Society
Online
2018-03-21
DOI
10.1098/rsos.172234
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Sizing up the bacterial cell cycle
- (2017) Lisa Willis et al. NATURE REVIEWS MICROBIOLOGY
- Balancing a genetic toggle switch by real-time feedback control and periodic forcing
- (2017) Jean-Baptiste Lugagne et al. Nature Communications
- Effects of growth rate and promoter activity on single-cell protein expression
- (2017) Niclas Nordholt et al. Scientific Reports
- Generation and filtering of gene expression noise by the bacterial cell cycle
- (2016) Noreen Walker et al. BMC BIOLOGY
- The Synchronization of Replication and Division Cycles in Individual E. coli Cells
- (2016) Mats Wallden et al. CELL
- Translation elicits a growth rate‐dependent, genome‐wide, differential protein production inBacillus subtilis
- (2016) Olivier Borkowski et al. Molecular Systems Biology
- Discrete gene replication events drive coupling between the cell cycle and circadian clocks
- (2016) Joris Paijmans et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes
- (2016) Mohammad Soltani et al. PLoS Computational Biology
- Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth
- (2016) Xiongfeng Dai et al. Nature Microbiology
- Cell-Size Control and Homeostasis in Bacteria
- (2015) Sattar Taheri-Araghi et al. CURRENT BIOLOGY
- Connecting growth with gene expression: of noise and numbers
- (2015) Vahid Shahrezaei et al. CURRENT OPINION IN MICROBIOLOGY
- Noise in gene expression is coupled to growth rate
- (2015) Leeat Keren et al. GENOME RESEARCH
- The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise
- (2015) Hermannus Kempe et al. MOLECULAR BIOLOGY OF THE CELL
- Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms
- (2015) Olivia Padovan-Merhar et al. MOLECULAR CELL
- Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria
- (2015) S. Hui et al. Molecular Systems Biology
- A noisy linear map underlies oscillations in cell size and gene expression in bacteria
- (2015) Yu Tanouchi et al. NATURE
- Overflow metabolism in Escherichia coli results from efficient proteome allocation
- (2015) Markus Basan et al. NATURE
- Quantifying cellular capacity identifies gene expression designs with reduced burden
- (2015) Francesca Ceroni et al. NATURE METHODS
- The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons
- (2015) José García-Martínez et al. NUCLEIC ACIDS RESEARCH
- Effects of DNA replication on mRNA noise
- (2015) Joseph R. Peterson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell-size maintenance: universal strategy revealed
- (2015) Suckjoon Jun et al. TRENDS IN MICROBIOLOGY
- Simultaneous regulation of cell size and chromosome replication in bacteria
- (2015) Po-Yi Ho et al. Frontiers in Microbiology
- Contributions of Cell Growth and Biochemical Reactions to Nongenetic Variability of Cells
- (2014) Anne Schwabe et al. BIOPHYSICAL JOURNAL
- Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
- (2014) Gene-Wei Li et al. CELL
- Quantifying gene expression variability arising from randomness in cell division times
- (2014) Duarte Antunes et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Dynamics of small genetic circuits subject to stochastic partitioning in cell division
- (2014) Jason Lloyd-Price et al. JOURNAL OF THEORETICAL BIOLOGY
- Emergence of robust growth laws from optimal regulation of ribosome synthesis
- (2014) M. Scott et al. Molecular Systems Biology
- Stochasticity of metabolism and growth at the single-cell level
- (2014) Daniel J. Kiviet et al. NATURE
- Cell Size Regulation in Bacteria
- (2014) Ariel Amir PHYSICAL REVIEW LETTERS
- Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations
- (2013) Nela Nikolic et al. BMC MICROBIOLOGY
- Modeling the effect of cell division on genetic oscillators
- (2013) Didier Gonze JOURNAL OF THEORETICAL BIOLOGY
- Promoters maintain their relative activity levels under different growth conditions
- (2013) L. Keren et al. Molecular Systems Biology
- Dissecting specific and global transcriptional regulation of bacterial gene expression
- (2013) L. Gerosa et al. Molecular Systems Biology
- Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
- (2013) S. Berthoumieux et al. Molecular Systems Biology
- Growth-rate-dependent dynamics of a bacterial genetic oscillator
- (2013) Matteo Osella et al. PHYSICAL REVIEW E
- Slow Protein Fluctuations Explain the Emergence of Growth Phenotypes and Persistence in Clonal Bacterial Populations
- (2013) Andrea Rocco et al. PLoS One
- Simulation of E. coli Gene Regulation including Overlapping Cell Cycles, Growth, Division, Time Delays and Noise
- (2013) Ruoyu Luo et al. PLoS One
- Molecular crowding limits translation and cell growth
- (2013) S. Klumpp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular mechanisms of multiple toxin-antitoxin systems are coordinated to govern the persister phenotype
- (2013) R. A. Fasani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy
- (2013) Ilaria Cataudella et al. PLoS Computational Biology
- A General Model for Toxin-Antitoxin Module Dynamics Can Explain Persister Cell Formation in E. coli
- (2013) Lendert Gelens et al. PLoS Computational Biology
- Cell-Cycle Dependence of Transcription Dominates Noise in Gene Expression
- (2013) C. J. Zopf et al. PLoS Computational Biology
- Cell Size Control in Yeast
- (2012) Jonathan J. Turner et al. CURRENT BIOLOGY
- Mitochondrial Variability as a Source of Extrinsic Cellular Noise
- (2012) Iain G. Johnston et al. PLoS Computational Biology
- Random partitioning of molecules at cell division
- (2011) D. Huh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Robust Growth of Escherichia coli
- (2010) Ping Wang et al. CURRENT BIOLOGY
- Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
- (2010) Y. Taniguchi et al. SCIENCE
- Interdependence of Cell Growth and Gene Expression: Origins and Consequences
- (2010) M. Scott et al. SCIENCE
- Analytical approximations for the amplitude and period of a relaxation oscillator
- (2009) Carmen Kut et al. BMC Systems Biology
- Growth Rate-Dependent Global Effects on Gene Expression in Bacteria
- (2009) Stefan Klumpp et al. CELL
- Shifts in growth strategies reflect tradeoffs in cellular economics
- (2009) Douwe Molenaar et al. Molecular Systems Biology
- Emergent bistability by a growth-modulating positive feedback circuit
- (2009) Cheemeng Tan et al. Nature Chemical Biology
- Cell cycle-dependent variations in protein concentration
- (2009) Natalie A. Cookson et al. NUCLEIC ACIDS RESEARCH
- Colored extrinsic fluctuations and stochastic gene expression
- (2008) Vahid Shahrezaei et al. Molecular Systems Biology
- Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
- (2008) Boris Görke et al. NATURE REVIEWS MICROBIOLOGY
- Analytical distributions for stochastic gene expression
- (2008) V. Shahrezaei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started