Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes

The flagellar apparatus of the glaucophyte Cyanophora cuspidata

(2017) Aaron A. Heiss et al.   JOURNAL OF PHYCOLOGY

Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages

(2017) Yoshinori Fukasawa et al.   MOLECULAR BIOLOGY AND EVOLUTION

Between a Pod and a Hard Test: The Deep Evolution of Amoebae

(2017) Seungho Kang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

(2017) Michelle M. Leger et al.   Nature Ecology & Evolution

A paneukaryotic genomic analysis of the small GTPase RABL2 underscores the significance of recurrent gene loss in eukaryote evolution

(2016) Marek Eliáš et al.   Biology Direct

Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

(2016) Alexandros A. Pittis et al.   NATURE

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

(2016) Fabien Burki et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial proteins pinpoint a single eukaryotic root

(2015) Romain Derelle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.)

(2015) Qianqian Zhang et al.   PROTIST

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage

(2015) Tomáš Pánek et al.   Frontiers in Microbiology

Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa

(2014) Ryoma Kamikawa et al.   Genome Biology and Evolution

The Eukaryotic Ancestor Had a Complex Ubiquitin Signaling System of Archaeal Origin

(2014) Xavier Grau-Bové et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa

(2014) Thomas Cavalier-Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules

(2014) Matus Valach et al.   NUCLEIC ACIDS RESEARCH

Taxon-Rich Phylogenomic Analyses Resolve the Eukaryotic Tree of Life and Reveal the Power of Subsampling by Sites

(2014) Laura A. Katz et al.   SYSTEMATIC BIOLOGY

The Eukaryotic Tree of Life from a Global Phylogenomic Perspective

(2014) F. Burki   Cold Spring Harbor Perspectives in Biology

Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists

(2013) Gertraud Burger et al.   Genome Biology and Evolution

Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics

(2013) Sen Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of microtubule organizing centers across the tree of eukaryotes

(2013) Naoji Yubuki et al.   PLANT JOURNAL

Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads

(2013) M. W. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comprehensive Ultrastructure of Kipferlia bialata Provides Evidence for Character Evolution within the Fornicata (Excavata)

(2013) Naoji Yubuki et al.   PROTIST

The Microtubular Cytoskeleton of the Apusomonad Thecamonas, a Sister Lineage to the Opisthokonts

(2013) Aaron A. Heiss et al.   PROTIST

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Aggregative Multicellularity Evolved Independently in the Eukaryotic Supergroup Rhizaria

(2012) Matthew W. Brown et al.   CURRENT BIOLOGY

Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa

(2012) Thomas Cavalier-Smith   EUROPEAN JOURNAL OF PROTISTOLOGY

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Collodictyon--An Ancient Lineage in the Tree of Eukaryotes

(2012) S. Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tsukubamonas globosa n. gen., n. sp., A Novel Excavate Flagellate Possibly Holding a Key for the Early Evolution in “Discoba”

(2011) AKINORI YABUKI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Rooting the Eukaryotic Tree with Mitochondrial and Bacterial Proteins

(2011) R. Derelle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

(2010) Laura Wegener Parfrey et al.   SYSTEMATIC BIOLOGY

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES