Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages

Protein Import by the Mitochondrial Presequence Translocase in the Absence of a Membrane Potential

(2016) Uma Turakhiya et al.   JOURNAL OF MOLECULAR BIOLOGY

The Role of Charge in Protein Targeting Evolution

(2016) Sriram G. Garg et al.   TRENDS IN CELL BIOLOGY

Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates

(2015) Christopher D. Aakre et al.   CELL

N-Terminal Presequence-Independent Import of Phosphofructokinase into Hydrogenosomes of Trichomonas vaginalis

(2015) Petr Rada et al.   EUKARYOTIC CELL

Conservation of Transit Peptide-Independent Protein Import into the Mitochondrial and Hydrogenosomal Matrix

(2015) Sriram Garg et al.   Genome Biology and Evolution

MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites

(2015) Yoshinori Fukasawa et al.   MOLECULAR & CELLULAR PROTEOMICS

Probing the Biology of Giardia intestinalis Mitosomes UsingIn VivoEnzymatic Tagging

(2015) Eva Martincová et al.   MOLECULAR AND CELLULAR BIOLOGY

Peeping at TOMs—Diverse Entry Gates to Mitochondria Provide Insights into the Evolution of Eukaryotes

(2015) Jan Mani et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial proteins pinpoint a single eukaryotic root

(2015) Romain Derelle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The TOM Complex of Amoebozoans: the Cases of the Amoeba Acanthamoeba castellanii and the Slime Mold Dictyostelium discoideum

(2015) Małgorzata Wojtkowska et al.   PROTIST

Molecular architecture of the active mitochondrial protein gate

(2015) T. Shiota et al.   SCIENCE

Unlocking the presequence import pathway

(2015) Christian Schulz et al.   TRENDS IN CELL BIOLOGY

Mitochondrial protein import receptors in Kinetoplastids reveal convergent evolution over large phylogenetic distances

(2015) Jan Mani et al.   Nature Communications

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Expansion of Biological Pathways Based on Evolutionary Inference

(2014) Yang Li et al.   CELL

Compositional complexity of the mitochondrial proteome of a unicellular eukaryote (Acanthamoeba castellanii, supergroup Amoebozoa) rivals that of animals, fungi, and plants

(2014) Ryan M.R. Gawryluk et al.   Journal of Proteomics

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Highly divergent mitochondrion-related organelles in anaerobic parasitic protozoa

(2013) Takashi Makiuchi et al.   BIOCHIMIE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Novel TPR-containing subunit of TOM complex functions as cytosolic receptor for Entamoeba mitosomal transport

(2013) Takashi Makiuchi et al.   Scientific Reports

Tom40 is likely common to all mitochondria

(2012) Vojtech Zarsky et al.   CURRENT BIOLOGY

Genetic Analysis of Complex Interactions Among Components of the Mitochondrial Import Motor and Translocon in Saccharomyces cerevisiae

(2012) B. A. Schilke et al.   GENETICS

Protein Translocase of Mitochondrial Inner Membrane inTrypanosoma brucei

(2012) Ujjal K. Singha et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Tim50 inTrypanosoma bruceiPossesses a Dual Specificity Phosphatase Activity and Is Critical for Mitochondrial Protein Import

(2012) Melanie R. Duncan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

In vivo protein-interaction mapping of a mitochondrial translocator protein Tom22 at work

(2011) T. Shiota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An in silico analysis of the mitochondrial protein import apparatus of plants

(2010) Chris Carrie et al.   BMC PLANT BIOLOGY

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

(2010) Lillian K. Fritz-Laylin et al.   CELL

A Simple Definition of Structural Regions in Proteins and Its Use in Analyzing Interface Evolution

(2010) Emmanuel D. Levy   JOURNAL OF MOLECULAR BIOLOGY

Recognition of Mitochondrial Targeting Sequences by the Import Receptors Tom20 and Tom22

(2010) Kieran A. Rimmer et al.   JOURNAL OF MOLECULAR BIOLOGY

The energetics of genome complexity

(2010) Nick Lane et al.   NATURE

Evolution of macromolecular import pathways in mitochondria, hydrogenosomes and mitosomes

(2010) T. Lithgow et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Importing Mitochondrial Proteins: Machineries and Mechanisms

(2009) Agnieszka Chacinska et al.   CELL

EuPathDB: a portal to eukaryotic pathogen databases

(2009) Cristina Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

The reducible complexity of a mitochondrial molecular machine

(2009) A. Clements et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitosomes in Entamoeba histolytica contain a sulfate activation pathway

(2009) F. Mi-ichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of a Reduced and Modified Mitochondrial Protein Import Apparatus in Microsporidian Mitosomes

(2008) Ross F. Waller et al.   EUKARYOTIC CELL

The generalized Born/volume integral implicit solvent model: Estimation of the free energy of hydration using London dispersion instead of atomic surface area

(2008) Paul Labute   JOURNAL OF COMPUTATIONAL CHEMISTRY

Characterization of the mitochondrial inner membrane protein translocator Tim17 from Trypanosoma brucei

(2008) Ujjal K. Singha et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

(2008) R. Ujwal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comprehensive analysis of Trypanosoma brucei mitochondrial proteome

(2008) Aswini K. Panigrahi et al.   PROTEOMICS

The direct route: a simplified pathway for protein import into the mitochondrion of trypanosomes

(2008) André Schneider et al.   TRENDS IN CELL BIOLOGY