Design and implementation of multi-signal and time-varying neural reconstructions

Calcium signalling in medial intercalated cell dendrites and spines

(2017) Cornelia Strobel et al.   JOURNAL OF PHYSIOLOGY-LONDON

Win–win data sharing in neuroscience

(2017) Giorgio A Ascoli et al.   NATURE METHODS

An optogenetic toolbox for unbiased discovery of functionally connected cells in neural circuits

(2017) Dominique Förster et al.   Nature Communications

An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains

(2017) Jonas Ranft et al.   PLoS Computational Biology

Automated Remote Focusing, Drift Correction, and Photostimulation to Evaluate Structural Plasticity in Dendritic Spines

(2017) Michael S. Smirnov et al.   PLoS One

Array tomography of physiologically-characterized CNS synapses

(2016) Ricardo A. Valenzuela et al.   JOURNAL OF NEUROSCIENCE METHODS

In vivo imaging of dendritic pruning in dentate granule cells

(2016) J Tiago Gonçalves et al.   NATURE NEUROSCIENCE

Experience-Dependent Bimodal Plasticity of Inhibitory Neurons in Early Development

(2016) Hai-Yan He et al.   NEURON

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Effect of enriching the diet with menhaden oil or daily treatment with resolvin D1 on neuropathy in a mouse model of type 2 diabetes

(2015) Hanna Shevalye et al.   JOURNAL OF NEUROPHYSIOLOGY

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

(2015) Yinan Wan et al.   NEUROINFORMATICS

Neuronal morphometry directly from bitmap images

(2014) Tiago A Ferreira et al.   NATURE METHODS

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Rapid Hebbian axonal remodeling mediated by visual stimulation

(2014) M. Munz et al.   SCIENCE

Context-aware modeling of neuronal morphologies

(2014) Benjamin Torben-Nielsen et al.   Frontiers in Neuroanatomy

Computer Aided Alignment and Quantitative 4D Structural Plasticity Analysis of Neurons

(2013) Ping-Chang Lee et al.   NEUROINFORMATICS

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

Functional Genomic Analyses of Two Morphologically Distinct Classes of Drosophila Sensory Neurons: Post-Mitotic Roles of Transcription Factors in Dendritic Patterning

(2013) Eswar Prasad R. Iyer et al.   PLoS One

STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies

(2012) Iain Hepburn et al.   BMC Systems Biology

Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees

(2012) Eftychios A. Pnevmatikakis et al.   PLoS Computational Biology

Flybow: genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster

(2011) Dafni Hadjieconomou et al.   NATURE METHODS

mGRASP enables mapping mammalian synaptic connectivity with light microscopy

(2011) Jinhyun Kim et al.   NATURE METHODS

Diadem X: Automated 4 Dimensional Analysis of Morphological Data

(2011) Hai Yan He et al.   NEUROINFORMATICS

In Vivo Time-Lapse Imaging and Serial Section Electron Microscopy Reveal Developmental Synaptic Rearrangements

(2011) Jianli Li et al.   NEURON

Wide-Field Multi-Parameter FLIM: Long-Term Minimal Invasive Observation of Proteins in Living Cells

(2011) Marco Vitali et al.   PLoS One

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application

(2010) Hermann Cuntz et al.   PLoS Computational Biology

NETMORPH: A Framework for the Stochastic Generation of Large Scale Neuronal Networks With Realistic Neuron Morphologies

(2009) Randal A. Koene et al.   NEUROINFORMATICS

Spectral Unmixing: Analysis of Performance in the Olfactory Bulb In Vivo

(2009) Mathieu Ducros et al.   PLoS One

Computational Models of Neuronal Biophysics and the Characterization of Potential Neuropharmacological Targets

(2008) Michele Ferrante et al.   CURRENT MEDICINAL CHEMISTRY

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols

NeuroMorpho.Org Implementation of Digital Neuroscience: Dense Coverage and Integration with the NIF

(2008) Maryam Halavi et al.   NEUROINFORMATICS

A Comparative Computer Simulation of Dendritic Morphology

(2008) Duncan E. Donohue et al.   PLoS Computational Biology