BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

From DIADEM to BigNeuron

(2015) Hanchuan Peng et al.   NEUROINFORMATICS

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Structure-Based Neuron Retrieval Across Drosophila Brains

(2014) Florian Ganglberger et al.   NEUROINFORMATICS

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

(2013) Hang Xiao et al.   BIOINFORMATICS

Automated image computing reshapes computational neuroscience

(2013) Hanchuan Peng et al.   BMC BIOINFORMATICS

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

Consensus Skeleton for Non-rigid Space-time Registration

(2010) Q. Zheng et al.   COMPUTER GRAPHICS FORUM

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Semi-automated reconstruction of neural circuits using electron microscopy

(2010) Dmitri B Chklovskii et al.   CURRENT OPINION IN NEUROBIOLOGY

Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts

(2010) A. Cardona et al.   JOURNAL OF NEUROSCIENCE

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

The Tree-Edit-Distance, a Measure for Quantifying Neuronal Morphology

(2009) Holger Heumann et al.   NEUROINFORMATICS

NETMORPH: A Framework for the Stochastic Generation of Large Scale Neuronal Networks With Realistic Neuron Morphologies

(2009) Randal A. Koene et al.   NEUROINFORMATICS

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols