Mining Novel Constitutive Promoter Elements in Soil Metagenomic Libraries in Escherichia coli

Calibrating Transcriptional Activity Using Constitutive Synthetic Promoters in Mutants for Global Regulators in Escherichia coli

(2018) Ananda Sanches-Medeiros et al.   International Journal of Genomics

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria andEscherichia coli

(2016) Ilham Ayub Shahmuradov et al.   BIOINFORMATICS

Principles for designing synthetic microbial communities

(2016) Nathan I Johns et al.   CURRENT OPINION IN MICROBIOLOGY

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli

(2015) Xizeng Mao et al.   BMC BIOINFORMATICS

Bioengineering the biosphere?

(2015) Ricard Solé   Ecological Complexity

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Ecological communities by design

(2015) J. K. Fredrickson   SCIENCE

Current and future resources for functional metagenomics

(2015) Kathy N. Lam et al.   Frontiers in Microbiology

Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient

(2015) Caroline S. Fortunato et al.   PLoS One

Alternative hosts for functional (meta)genome analysis

(2014) Wolfgang Liebl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities

(2014) Leyden Fernandez et al.   BMC GENOMICS

Improved cultivation and metagenomics as new tools for bioprospecting in cold environments

(2014) Jan Kjølhede Vester et al.   EXTREMOPHILES

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

(2014) Chris L Dupont et al.   ISME Journal

The Whole Set of Constitutive Promoters Recognized by RNA Polymerase RpoD Holoenzyme of Escherichia coli

(2014) Tomohiro Shimada et al.   PLoS One

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

(2014) T. Conway et al.   mBio

Expanding the Logic of Bacterial Promoters Using Engineered Overlapping Operators for Global Regulators

(2014) María-Eugenia Guazzaroni et al.   ACS Synthetic Biology

Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening

(2014) María-Eugenia Guazzaroni et al.   Microbial Biotechnology

High Variation of Fluorescence Protein Maturation Times in Closely Related Escherichia coli Strains

(2013) Elke Hebisch et al.   PLoS One

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

(2012) Anne de Jong et al.   BMC GENOMICS

Novel acid resistance genes from the metagenome of the Tinto River, an extremely acidic environment

(2012) María-Eugenia Guazzaroni et al.   ENVIRONMENTAL MICROBIOLOGY

A vast collection of microbial genes that are toxic to bacteria

(2012) A. Kimelman et al.   GENOME RESEARCH

The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces

(2012) Xizeng Mao et al.   NUCLEIC ACIDS RESEARCH

Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology

(2012) Benjamin A. Blount et al.   PLoS One

The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences

(2012) Kaustubh Raosaheb Patil et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correction: A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli

(2012) Olin K. Silander et al.   PLoS Genetics

The great screen anomaly—a new frontier in product discovery through functional metagenomics

(2011) David Matthias Ekkers et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

A novel cold active esterase derived from Colombian high Andean forest soil metagenome

(2011) Diego Javier Jiménez et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Identification and characterization of alkaline serine protease from goat skin surface metagenome

(2011) Paul Pushpam et al.   AMB Express

Product-Induced Gene Expression, a Product-Responsive Reporter Assay Used To Screen Metagenomic Libraries for Enzyme-Encoding Genes

(2010) T. Uchiyama et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of intra-genomic GC content homogeneity within prokaryotes

(2010) Jon Bohlin et al.   BMC GENOMICS

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Metagenomics: Concept, methodology, ecological inference and recent advances

(2009) Jagtar Singh et al.   Biotechnology Journal

Bacterial genomic G+C composition-eliciting environmental adaptation

(2009) Scott Mann et al.   GENOMICS

Harnessing nature's toolbox: regulatory elements for synthetic biology

(2009) P. M. Boyle et al.   Journal of the Royal Society Interface

The transcription unit architecture of the Escherichia coli genome

(2009) Byung-Kwan Cho et al.   NATURE BIOTECHNOLOGY

Measuring the activity of BioBrick promoters using an in vivo reference standard

(2009) Jason R Kelly et al.   Journal of Biological Engineering

Minerals in the clay fraction of Brazilian Latosols (Oxisols): a review

(2008) C. E. G. R. Schaefer et al.   CLAY MINERALS

Mining logic gates in prokaryotic transcriptional regulation networks

(2008) Rafael Silva-Rocha et al.   FEBS LETTERS

Evolution of genome architecture

(2008) Eugene V. Koonin   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA