Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing

The molecular ecology of Microcystis sp. blooms in the San Francisco Estuary

(2017) Timothy G. Otten et al.   ENVIRONMENTAL MICROBIOLOGY

A Metagenomic Approach to Cyanobacterial Genomics

(2017) Danillo O. Alvarenga et al.   Frontiers in Microbiology

Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping

(2017) Katherine R. M. Mackey et al.   Frontiers in Microbiology

Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes

(2017) Michelle A. Berry et al.   Frontiers in Microbiology

Ecogenomics and Taxonomy of Cyanobacteria Phylum

(2017) Juline M. Walter et al.   Frontiers in Microbiology

Exploring Components of the CO 2 -Concentrating Mechanism in Alkaliphilic Cyanobacteria Through Genome-Based Analysis

(2017) Amornpan Klanchui et al.   Computational and Structural Biotechnology Journal

Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis

(2017) Niranjan Nitin Parulekar et al.   PLoS One

Dominance and succession of Microcystis genotypes and morphotypes in Lake Taihu, a large and shallow freshwater lake in China

(2016) Yang Liu et al.   ENVIRONMENTAL POLLUTION

How rising CO 2 and global warming may stimulate harmful cyanobacterial blooms

(2016) Petra M. Visser et al.   HARMFUL ALGAE

Genetic characterization of Microcystis aeruginosa isolates from Portuguese freshwater systems

(2016) Cristiana Moreira et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing

(2016) Jun-Yi Zhang et al.   Standards in Genomic Sciences

Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors

(2016) Mireia Bertos-Fortis et al.   Frontiers in Microbiology

Application of molecular tools for microbial source tracking and public health risk assessment of a Microcystis bloom traversing 300km of the Klamath River

(2015) Timothy G. Otten et al.   HARMFUL ALGAE

Genotypes of ITS region of rRNA inMicrocystis(Cyanobacteria) populations in Erhai Lake (China) and their correlation with eutrophication level

(2015) Gaofei Song et al.   JOURNAL OF BASIC MICROBIOLOGY

Nutrient limitation dynamics examined on a multi-annual scale in Lake Taihu, China: implications for controlling eutrophication and harmful algal blooms

(2015) Hans W. Paerl et al.   JOURNAL OF FRESHWATER ECOLOGY

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer

(2014) Paul M. Ruegger et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Rising CO2 Levels Will Intensify Phytoplankton Blooms in Eutrophic and Hypertrophic Lakes

(2014) Jolanda M. H. Verspagen et al.   PLoS One

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Microbial genomic taxonomy

(2013) Cristiane C Thompson et al.   BMC GENOMICS

PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis

(2013) Takafumi Kataoka et al.   HARMFUL ALGAE

Phylogeny and Biogeography of Cyanobacteria and Their Produced Toxins

(2013) Cristiana Moreira et al.   Marine Drugs

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Genetic Diversity of Bloom-Forming Microcystis (Cyanobacteria) Populations in a Hyper-Eutrophic Pond in Central China

(2012) Mengling Zhu et al.   CURRENT MICROBIOLOGY

Quantification of microcystin-producing and non-microcystin producing Microcystis populations during the 2009 and 2010 blooms in Lake Taihu using quantitative real-time PCR

(2012) Daming Li et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Spatial heterogeneity of cyanobacterial communities and genetic variation of Microcystis populations within large, shallow eutrophic lakes (Lake Taihu and Lake Chaohu, China)

(2012) Yuanfeng Cai et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Cyanobacterial genomics for ecology and biotechnology

(2011) Wolfgang R Hess   CURRENT OPINION IN MICROBIOLOGY

Genotype × genotype interactions between the toxic cyanobacteriumMicrocystisand its grazer, the waterfleaDaphnia

(2011) Veerle Lemaire et al.   Evolutionary Applications

High-frequency monitoring of the genetic diversity and the potential toxicity of a Microcystis aeruginosa bloom in a French shallow lake

(2011) David Pobel et al.   FEMS MICROBIOLOGY ECOLOGY

What drives the distribution of the bloom-forming cyanobacteria Planktothrix agardhii and Cylindrospermopsis raciborskii?

(2011) Sylvia Bonilla et al.   FEMS MICROBIOLOGY ECOLOGY

The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change

(2011) J.M. O’Neil et al.   HARMFUL ALGAE

Genetic diversity of Microcystis populations in a bloom and its relationship to the environmental factors in Qinhuai River, China

(2011) Yao Xu et al.   MICROBIOLOGICAL RESEARCH

Dynamics of microcystin production and quantification of potentially toxigenic Microcystis sp. using real-time PCR

(2011) Ankita Srivastava et al.   WATER RESEARCH

Population Turnover in a Microcystis Bloom Results in Predominantly Nontoxigenic Variants Late in the Season

(2010) C. S. Bozarth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of the water bloom-forming Microcystis and its relationship with physicochemical factors in Lake Xuanwu (China)

(2010) Yao Xu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

cpcBA-IGS as an effective marker to characterize Microcystis wesenbergii (Komárek) Komárek in Kondrateva (cyanobacteria)

(2010) Wenhua Tan et al.   HARMFUL ALGAE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Toxicity phenotype does not correlate with phylogeny of Cylindrospermopsis raciborskii strains

(2009) Karina Stucken et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Spatiotemporal changes in the genetic diversity in French bloom-forming populations of the toxic cyanobacterium,Microcystis aeruginosa

(2009) Marion Sabart et al.   Environmental Microbiology Reports

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

(2008) Lionel Frangeul et al.   BMC GENOMICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

GridR: An R-based tool for scientific data analysis in grid environments

(2008) Dennis Wegener et al.   Future Generation Computer Systems-The International Journal of eScience

Spatiotemporal changes in the genetic diversity of a bloom-forming Microcystis aeruginosa (cyanobacteria) population

(2008) Enora Briand et al.   ISME Journal

Intra-specific phenotypic and genotypic variation in toxic cyanobacterialMicrocystisstrains

(2008) M. Yoshida et al.   JOURNAL OF APPLIED MICROBIOLOGY

CLIMATE: Blooms Like It Hot

(2008) H. W. Paerl et al.   SCIENCE