The Use of a Combined Bioinformatics Approach to Locate Antibiotic Resistance Genes on Plasmids From Whole Genome Sequences of Salmonella enterica Serovars From Humans in Ghana

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica

(2017) Maria Hoffmann et al.   Frontiers in Microbiology

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

(2017) Alex Orlek et al.   Frontiers in Microbiology

plasmidSPAdes: assembling plasmids from whole genome sequencing data

(2016) Dmitry Antipov et al.   BIOINFORMATICS

Comparative study of all Salmonella enterica serovar Enteritidis strains isolated from food and food animals in Greece from 2008 to 2010 with clinical isolates

(2016) T. Papadopoulos et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The role of IS 26 in evolution of a derivative of the virulence plasmid of Salmonella enterica serovar Enteritidis which confers multiple drug resistance

(2016) Vanesa García et al.   INFECTION GENETICS AND EVOLUTION

First Description of the Extended Spectrum-Beta-Lactamase Gene blaCTX-M-109 in Salmonella Grumpensis Strains Isolated from Neonatal Nosocomial Infections in Dakar, Senegal

(2016) Amadou Diop et al.   PLoS One

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

(2016) Catherine E. Yoshida et al.   PLoS One

Characterisation of Commensal Escherichia coli Isolated from Apparently Healthy Cattle and Their Attendants in Tanzania

(2016) Balichene P. Madoshi et al.   PLoS One

Ceftriaxone-Resistant Salmonella enterica Serotype Typhimurium Sequence Type 313 from Kenyan Patients Is Associated with theblaCTX-M-15Gene on a Novel IncHI2 Plasmid

(2015) Samuel Kariuki et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IncI1 Plasmids Carrying VariousblaCTX-MGenes Contribute to Ceftriaxone Resistance in Salmonella enterica Serovar Enteritidis in China

(2015) Marcus Ho-yin Wong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Epidemiology, Clinical Presentation, Laboratory Diagnosis, Antimicrobial Resistance, and Antimicrobial Management of Invasive Salmonella Infections

(2015) John A. Crump et al.   CLINICAL MICROBIOLOGY REVIEWS

Salmonella Serotype Determination Utilizing High-Throughput Genome Sequencing Data

(2015) Shaokang Zhang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313

(2014) Ana Herrero-Fresno et al.   PLoS One

High Levels of Extended-Spectrum Beta-Lactamases in a Major Teaching Hospital in Ghana: The Need for Regular Monitoring and Evaluation of Antibiotic Resistance

(2013) Noah Obeng-Nkrumah et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004

(2013) Marc W. Allard et al.   PLoS One

Molecular Characterization of Motile Serovars of Salmonella enterica from Breeder and Commercial Broiler Poultry Farms in Bangladesh

(2013) Himel Barua et al.   PLoS One

First Human Isolate of Salmonella enterica Serotype Enteritidis HarboringblaCTX-M-14in South America

(2012) Inés Bado et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

High-Resolution Single Nucleotide Polymorphism Analysis Distinguishes Recrudescence and Reinfection in Recurrent Invasive Nontyphoidal Salmonella Typhimurium Disease

(2012) Chinyere K. Okoro et al.   CLINICAL INFECTIOUS DISEASES

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

(2012) Timothy J. Johnson et al.   PLASMID

The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution

(2012) Felix Eikmeyer et al.   PLASMID

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

(2012) Mark Achtman et al.   PLoS Pathogens

Characterization of a novel extended-spectrum β-lactamase phenotype from OXA-1 expression in Salmonella Typhimurium strains from Africa and Ireland

(2011) Fiona Boyle et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

First description of qnrS1-IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal

(2011) Patrícia Antunes et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Global Monitoring of Salmonella Serovar Distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: Results of Quality Assured Laboratories from 2001 to 2007

(2011) Rene S. Hendriksen et al.   Foodborne Pathogens and Disease

Investigation of diversity of plasmids carrying the blaTEM-52 gene

(2011) Eliza Bielak et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain

(2011) Muna F. Anjum et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin

(2011) S. Le Hello et al.   JOURNAL OF INFECTIOUS DISEASES

Prevalence and Genetic Characteristics of TEM, SHV, and CTX-M in Clinical Klebsiella pneumoniae Isolates from Saudi Arabia

(2011) Abdulkader F. Tawfik et al.   Microbial Drug Resistance

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

(2009) R. A. Kingsley et al.   GENOME RESEARCH

Characterization of pUO-StVR2, a Virulence-Resistance Plasmid Evolved from the pSLT Virulence Plasmid of Salmonella enterica Serovar Typhimurium

(2008) A. Herrero et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Antimicrobial resistance in typhoidal and nontyphoidal salmonellae

(2008) Christopher M Parry et al.   CURRENT OPINION IN INFECTIOUS DISEASES