Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

Age of the Association between Helicobacter pylori and Man

(2012) Yoshan Moodley et al.   PLoS Pathogens

Rapid Screening of Epidemiologically Important Salmonella enterica subsp. enterica Serovars by Whole-Cell Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

(2011) Ralf Dieckmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Substructure within Salmonella enterica subsp. enterica Isolates from Australian Wildlife

(2011) Sandra K. Parsons et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pullorum disease and fowl typhoid—new thoughts on old diseases: a review

(2011) P. A. Barrow et al.   AVIAN PATHOLOGY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

(2011) Henk C den Bakker et al.   BMC GENOMICS

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

(2011) Riikka Laukkanen-Ninios et al.   ENVIRONMENTAL MICROBIOLOGY

Introgression in the genus Campylobacter: generation and spread of mosaic alleles

(2011) S. K. Sheppard et al.   MICROBIOLOGY-SGM

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic anatomy of Escherichia coli O157:H7 outbreaks

(2011) M. Eppinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of two DNA microarrays for detection of plasmid-mediated antimicrobial resistance and virulence factor genes in clinical isolates of Enterobacteriaceae and non-Enterobacteriaceae

(2010) Fiona Walsh et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Characterisation of multidrug-resistant Salmonella Typhimurium 4,[5],12:i:- DT193 strains carrying a novel genomic island adjacent to the thrW tRNA locus

(2010) Sandra Trüpschuch et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Evolution and Population Structure of Salmonella enterica Serovar Newport

(2010) V. Sangal et al.   JOURNAL OF BACTERIOLOGY

Multi-locus sequence typing of Salmonella enterica serovar Typhimurium isolates from wild birds in northern England suggests host-adapted strain

(2010) L.A. Hughes et al.   LETTERS IN APPLIED MICROBIOLOGY

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

(2010) Giovanna Morelli et al.   NATURE GENETICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Microevolution of Helicobacter pylori during Prolonged Infection of Single Hosts and within Families

(2010) Giovanna Morelli et al.   PLoS Genetics

Identification by PCR of Non-typhoidal Salmonella enterica Serovars Associated with Invasive Infections among Febrile Patients in Mali

(2010) Sharon M. Tennant et al.   PLoS Neglected Tropical Diseases

Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains

(2009) Magdalena Wiesner et al.   BMC MICROBIOLOGY

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

(2009) R. A. Kingsley et al.   GENOME RESEARCH

Salmonella enterica Serotype 4,5,12:i:-, an Emerging Salmonella Serotype That Represents Multiple Distinct Clones

(2009) Y. Soyer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High-Throughput Molecular Determination of Salmonella enterica Serovars by Use of Multiplex PCR and Capillary Electrophoresis Analysis

(2009) B. T. Leader et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Peopling of the Pacific from a Bacterial Perspective

(2009) Y. Moodley et al.   SCIENCE

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

Occurrence and characterization of Salmonella enterica subspecies enterica serovar 9,12:l,v:- strains from Bulgaria, Denmark, and the United States

(2008) P. Petrov et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

(2008) N. R. Thomson et al.   GENOME RESEARCH

PCR Method To Identify Salmonella enterica Serovars Typhi, Paratyphi A, and Paratyphi B among Salmonella Isolates from the Blood of Patients with Clinical Enteric Fever

(2008) H. Levy et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

A Reservoir of Drug-Resistant Pathogenic Bacteria in Asymptomatic Hosts

(2008) Gabriel G. Perron et al.   PLoS One

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography

(2008) Ruth Hershberg et al.   PLOS BIOLOGY