Phenotypic Variation in Mojave Rattlesnake (Crotalus scutulatus) Venom Is Driven by Four Toxin Families

Rattling the border wall: Pathophysiological implications of functional and proteomic venom variation between Mexican and US subspecies of the desert rattlesnake Crotalus scutulatus

(2018) James Dobson et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

A Single Mutation Unlocks Cascading Exaptations in the Origin of a Potent Pitviper Neurotoxin

(2018) A Carl Whittington et al.   MOLECULAR BIOLOGY AND EVOLUTION

Venom-gland transcriptomics and venom proteomics of the Hentz striped scorpion ( Centruroides hentzi ; Buthidae) reveal high toxin diversity in a harmless member of a lethal family

(2018) Micaiah J. Ward et al.   TOXICON

Biological and Proteolytic Variation in the Venom of Crotalus scutulatus scutulatus from Mexico

(2018) Miguel Borja et al.   Toxins

Quantity, Not Quality: Rapid Adaptation in a Polygenic Trait Proceeded Exclusively through Expression Differentiation

(2017) Mark J Margres et al.   MOLECULAR BIOLOGY AND EVOLUTION

Venom-gland transcriptomics and venom proteomics of the black-back scorpion ( Hadrurus spadix ) reveal detectability challenges and an unexplored realm of animal toxin diversity

(2017) Darin R. Rokyta et al.   TOXICON

The genetics of venom ontogeny in the eastern diamondback rattlesnake (Crotalus adamanteus)

(2017) Darin R. Rokyta et al.   PeerJ

The Deep Origin and Recent Loss of Venom Toxin Genes in Rattlesnakes

(2016) Noah L. Dowell et al.   CURRENT BIOLOGY

Is Hybridization a Source of Adaptive Venom Variation in Rattlesnakes? A Test, Using a Crotalus scutulatus × viridis Hybrid Zone in Southwestern New Mexico

(2016) Giulia Zancolli et al.   Toxins

zCompositions — R package for multivariate imputation of left-censored data under a compositional approach

(2015) Javier Palarea-Albaladejo et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

The transcriptomic and proteomic basis for the evolution of a novel venom phenotype within the Timber Rattlesnake (Crotalus horridus)

(2015) Darin R. Rokyta et al.   TOXICON

Post-transcriptional Mechanisms Contribute Little to Phenotypic Variation in Snake Venoms

(2015) Darin R. Rokyta et al.   G3-Genes Genomes Genetics

Mojave Rattlesnake (Crotalus scutulatus scutulatus) with Type B Venom from Mexico

(2014) Miguel Borja et al.   COPEIA

Contrasting Modes and Tempos of Venom Expression Evolution in Two Snake Species

(2014) M. J. Margres et al.   GENETICS

Molecular models of the Mojave rattlesnake (Crotalus scutulatus scutulatus) venom metalloproteinases reveal a structural basis for differences in hemorrhagic activities

(2014) Ruben K. Dagda et al.   JOURNAL OF BIOLOGICAL PHYSICS

Medically important differences in snake venom composition are dictated by distinct postgenomic mechanisms

(2014) N. R. Casewell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

The genesis of an exceptionally lethal venom in the timber rattlesnake (Crotalus horridus) revealed through comparative venom-gland transcriptomics

(2013) Darin R Rokyta et al.   BMC GENOMICS

The venom-gland transcriptome of the eastern coral snake (Micrurus fulvius) reveals high venom complexity in the intragenomic evolution of venoms

(2013) Mark J Margres et al.   BMC GENOMICS

Integrated “omics” profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus

(2013) Jordi Durban et al.   BMC GENOMICS

Linking the transcriptome and proteome to characterize the venom of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2013) Mark J. Margres et al.   Journal of Proteomics

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2012) Darin R Rokyta et al.   BMC GENOMICS

Venom variability and envenoming severity outcomes of the Crotalus scutulatus scutulatus (Mojave rattlesnake) from Southern Arizona

(2012) Daniel J. Massey et al.   Journal of Proteomics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

C-type lectin-like proteins from snake venoms

(2012) Franziska T. Arlinghaus et al.   TOXICON

Complex cocktails: the evolutionary novelty of venoms

(2012) Nicholas R. Casewell et al.   TRENDS IN ECOLOGY & EVOLUTION

Snake Venomics of Crotalus tigris: The Minimalist Toxin Arsenal of the Deadliest Neartic Rattlesnake Venom. Evolutionary Clues for Generating a Pan-Specific Antivenom against Crotalid Type II Venoms

(2011) Juan J. Calvete et al.   JOURNAL OF PROTEOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Very Few RNA and DNA Sequence Differences in the Human Transcriptome

(2011) Daniel R. Schrider et al.   PLoS One

A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes

(2011) Darin R. Rokyta et al.   TOXICON

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Protein complexes in snake venom

(2009) R. Doley et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS