The genetics of venom ontogeny in the eastern diamondback rattlesnake (Crotalus adamanteus)

The Deep Origin and Recent Loss of Venom Toxin Genes in Rattlesnakes

(2016) Noah L. Dowell et al.   CURRENT BIOLOGY

Functional characterizations of venom phenotypes in the eastern diamondback rattlesnake ( Crotalus adamanteus ) and evidence for expression-driven divergence in toxic activities among populations

(2016) Mark J. Margres et al.   TOXICON

Constructing comprehensive venom proteome reference maps for integrative venomics

(2015) Susann Eichberg et al.   Expert Review of Proteomics

Expression Differentiation Is Constrained to Low-Expression Proteins over Ecological Timescales

(2015) M. J. Margres et al.   GENETICS

Phenotypic integration in the feeding system of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2015) Mark J. Margres et al.   MOLECULAR ECOLOGY

The transcriptomic and proteomic basis for the evolution of a novel venom phenotype within the Timber Rattlesnake (Crotalus horridus)

(2015) Darin R. Rokyta et al.   TOXICON

Early significant ontogenetic changes in snake venoms

(2015) Kenneth P. Wray et al.   TOXICON

Post-transcriptional Mechanisms Contribute Little to Phenotypic Variation in Snake Venoms

(2015) Darin R. Rokyta et al.   G3-Genes Genomes Genetics

VTBuilder: a tool for the assembly of multi isoform transcriptomes

(2014) John Archer et al.   BMC BIOINFORMATICS

Contrasting Modes and Tempos of Venom Expression Evolution in Two Snake Species

(2014) M. J. Margres et al.   GENETICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Life history constraints contribute to the vulnerability of a declining North American rattlesnake

(2013) Jayme L. Waldron et al.   BIOLOGICAL CONSERVATION

The venom-gland transcriptome of the eastern coral snake (Micrurus fulvius) reveals high venom complexity in the intragenomic evolution of venoms

(2013) Mark J Margres et al.   BMC GENOMICS

Integrated “omics” profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus

(2013) Jordi Durban et al.   BMC GENOMICS

Linking the transcriptome and proteome to characterize the venom of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2013) Mark J. Margres et al.   Journal of Proteomics

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2012) Darin R Rokyta et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Proteomic analysis of ontogenetic and diet-related changes in venom composition of juvenile and adult Dusky Pigmy rattlesnakes (Sistrurus miliarius barbouri)

(2011) H. Lisle Gibbs et al.   Journal of Proteomics

Adaptive Evolution of the Venom-Targeted vWF Protein in Opossums that Eat Pitvipers

(2011) Sharon A. Jansa et al.   PLoS One

A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes

(2011) Darin R. Rokyta et al.   TOXICON

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Analysis of the Ontogenetic Variation in the Venom Proteome/Peptidome ofBothrops jararacaReveals Different Strategies to Deal with Prey

(2010) André Zelanis et al.   JOURNAL OF PROTEOME RESEARCH

Snake venomics and antivenomics of Crotalus durissus subspecies from Brazil: Assessment of geographic variation and its implication on snakebite management

(2010) Johara Boldrini-França et al.   Journal of Proteomics

Evolutionary trends in venom composition in the Western Rattlesnakes (Crotalus viridis sensu lato): Toxicity vs. tenderizers

(2010) Stephen P. Mackessy   TOXICON

A rapid and sensitive fluorometric method for the quantitative analysis of snake venom metalloproteases and their inhibitors

(2010) J.E. Biardi et al.   TOXICON

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Snake Population Venomics: Proteomics-Based Analyses of Individual Variation Reveals Significant Gene Regulation Effects on Venom Protein Expression in Sistrurus Rattlesnakes

(2009) H. Lisle Gibbs et al.   JOURNAL OF MOLECULAR EVOLUTION

Snake Venomics of the Central American RattlesnakeCrotalus simusand the South AmericanCrotalus durissusComplex Points to Neurotoxicity as an Adaptive Paedomorphic Trend alongCrotalusDispersal in South America

(2009) Juan J. Calvete et al.   JOURNAL OF PROTEOME RESEARCH

Venom extraction from anesthetized Florida cottonmouths, Agkistrodon piscivorus conanti, using a portable nerve stimulator

(2009) Ryan J.R. McCleary et al.   TOXICON

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Rapid Evolution by Positive Selection and Gene Gain and Loss: PLA2 Venom Genes in Closely Related Sistrurus Rattlesnakes with Divergent Diets

(2008) H. Lisle Gibbs et al.   JOURNAL OF MOLECULAR EVOLUTION