Divergent bornaviruses from Australian carpet pythons with neurological disease date the origin of extant Bornaviridae prior to the end-Cretaceous extinction

Marine origin of retroviruses in the early Palaeozoic Era

(2017) Pakorn Aiewsakun et al.   Nature Communications

Time-Dependent Rate Phenomenon in Viruses

(2016) Pakorn Aiewsakun et al.   JOURNAL OF VIROLOGY

End-Cretaceous extinction in Antarctica linked to both Deccan volcanism and meteorite impact via climate change

(2016) Sierra V. Petersen et al.   Nature Communications

An RNA-dependent RNA polymerase gene in bat genomes derived from an ancient negative-strand RNA virus

(2016) Masayuki Horie et al.   Scientific Reports

Exaptation of Bornavirus-Like Nucleoprotein Elements in Afrotherians

(2016) Yuki Kobayashi et al.   PLoS Pathogens

Reduced evolutionary rate in reemerged Ebola virus transmission chains

(2016) D. J. Blackley et al.   Science Advances

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

(2015) Mark A. Miller et al.   Evolutionary Bioinformatics

A Variegated Squirrel Bornavirus Associated with Fatal Human Encephalitis

(2015) Bernd Hoffmann et al.   NEW ENGLAND JOURNAL OF MEDICINE

piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals

(2015) Nicholas F. Parrish et al.   RNA

Transcription Profiling Demonstrates Epigenetic Control of Non-retroviral RNA Virus-Derived Elements in the Human Genome

(2015) Kozue Sofuku et al.   Cell Reports

Taxonomic reorganization of the family Bornaviridae

(2014) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Prediction of nuclear export signals using weighted regular expressions (Wregex)

(2014) Gorka Prieto et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evolution of mammalian and avian bornaviruses

(2014) Mei He et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome

(2014) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes

(2014) C. Gilbert et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles

(2014) Shunichi Kosugi et al.   PLoS Computational Biology

Pathology and diagnosis of avian bornavirus infection in wild Canada geese (Branta canadensis), trumpeter swans (Cygnus buccinator) and mute swans (Cygnus olor) in Canada: a retrospective study

(2013) Pauline Delnatte et al.   AVIAN PATHOLOGY

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

(2013) Catharina Steentoft et al.   EMBO JOURNAL

Dating the divergence of the infectious hematopoietic necrosis virus

(2013) Mei He et al.   INFECTION GENETICS AND EVOLUTION

Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes

(2013) M. Horie et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nucleocytoplasmic Shuttling of Viral Proteins in Borna Disease Virus Infection

(2013) Tomoyuki Honda et al.   Viruses-Basel

Follow-Up Investigations on Different Courses of Natural Avian Bornavirus Infections in Psittacines

(2012) Ursula Heffels-Redmann et al.   AVIAN DISEASES

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Climate warming in the latest Permian and the Permian-Triassic mass extinction

(2012) M. M. Joachimski et al.   GEOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Level of Gene Expression Is a Major Determinant of Protein Evolution in the Viral Order Mononegavirales

(2012) I. Pagan et al.   JOURNAL OF VIROLOGY

Absence of evidence for bornavirus infection in schizophrenia, bipolar disorder and major depressive disorder

(2012) M Hornig et al.   MOLECULAR PSYCHIATRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Evolutionarily Conserved Interaction between the Phosphoproteins and X Proteins of Bornaviruses from Different Vertebrate Species

(2012) Kan Fujino et al.   PLoS One

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Birds and bornaviruses

(2012) Susan L. Payne et al.   ANIMAL HEALTH RESEARCH REVIEWS

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Avian Bornavirus is Present in Many Tissues of Psittacine Birds with Histopathologic Evidence of Proventricular Dilatation Disease

(2011) Raj Raghav et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Detection and Characterization of a Distinct Bornavirus Lineage from Healthy Canada Geese (Branta canadensis)

(2011) S. Payne et al.   JOURNAL OF VIROLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Paleozoic origin of insect large dsDNA viruses

(2011) J. Theze et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delayed recovery of non-marine tetrapods after the end-Permian mass extinction tracks global carbon cycle

(2011) R. B. Irmis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Borna disease virus – Fact and fantasy

(2011) W. Ian Lipkin et al.   VIRUS RESEARCH

Avian Bornavirus Associated with Fatal Disease in Psittacine Birds

(2010) P. Staeheli et al.   JOURNAL OF VIROLOGY

Endogenous non-retroviral RNA virus elements in mammalian genomes

(2010) Masayuki Horie et al.   NATURE

Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries

(2010) Yuki Furuse et al.   Virology Journal

Functional Interchangeability of Late Domains, Late Domain Cofactors and Ubiquitin in Viral Budding

(2010) Maria Zhadina et al.   PLoS Pathogens

Unexpected Inheritance: Multiple Integrations of Ancient Bornavirus and Ebolavirus/Marburgvirus Sequences in Vertebrate Genomes

(2010) Vladimir A. Belyi et al.   PLoS Pathogens

Anatomical distribution of avian bornavirus in parrots, its occurrence in clinically healthy birds and ABV-antibody detection

(2009) Michael Lierz et al.   AVIAN PATHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

(2009) Alex N Nguyen Ba et al.   BMC BIOINFORMATICS

Nyamanini and Midway Viruses Define a Novel Taxon of RNA Viruses in the Order Mononegavirales

(2009) K. A. Mihindukulasuriya et al.   JOURNAL OF VIROLOGY

Broad Tissue and Cell Tropism of Avian Bornavirus in Parrots with Proventricular Dilatation Disease

(2009) M. Rinder et al.   JOURNAL OF VIROLOGY

Novel Avian Bornavirus in a Nonpsittacine Species (Canary; Serinus canaria) with Enteric Ganglioneuritis and Encephalitis

(2009) H. Weissenbock et al.   JOURNAL OF VIROLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of the Borna disease virus matrix protein (BDV-M) reveals ssRNA binding properties

(2009) P. Neumann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate automatic structure prediction with HHpred

(2009) Andrea Hildebrand et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The diagnosis of proventricular dilatation disease: Use of a Western blot assay to detect antibodies against avian Borna virus

(2009) Itamar Villanueva et al.   VETERINARY MICROBIOLOGY

Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4

(2009) Ady Y Gancz et al.   Virology Journal

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: Identification of a candidate etiologic agent

(2008) Amy L Kistler et al.   Virology Journal