Comparative transcriptomics reveals CrebA as a novel regulator of infection tolerance in D. melanogaster

Dissecting the contributions of time and microbe density to variation in immune gene expression

(2017) Ann T. Tate et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

NOD1 and NOD2 signalling links ER stress with inflammation

(2016) A. Marijke Keestra-Gounder et al.   NATURE

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Drosophila CD36 Homologue croquemort Is Required to Maintain Immune and Gut Homeostasis during Development and Aging

(2016) Aurélien Guillou et al.   PLoS Pathogens

Drosophila as a model for unfolded protein response research

(2015) Hyung Don Ryoo   BMB Reports

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

(2015) Hana Imrichová et al.   NUCLEIC ACIDS RESEARCH

The Transcription and Translation Landscapes during Human Cytomegalovirus Infection Reveal Novel Host-Pathogen Interactions

(2015) Osnat Tirosh et al.   PLoS Pathogens

Induction of Excessive Endoplasmic Reticulum Stress in the Drosophila Male Accessory Gland Results in Infertility

(2015) Clement Y. Chow et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genotype and diet shape resistance and tolerance across distinct phases of bacterial infection

(2014) Virginia M Howick et al.   BMC EVOLUTIONARY BIOLOGY

Persephone/Spätzle Pathogen Sensors Mediate the Activation of Toll Receptor Signaling in Response to Endogenous Danger Signals in Apoptosis-deficientDrosophila

(2014) Ming Ming et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The PERK pathway independently triggers apoptosis and a Rac1/Slpr/JNK/Dilp8 signaling favoring tissue homeostasis in a chronic ER stress Drosophila model

(2014) Y Demay et al.   Cell Death & Disease

How to Live with the Enemy: Understanding Tolerance to Parasites

(2014) Lars Råberg   PLOS BIOLOGY

The ER luminal binding protein (BiP) alleviates Cd2+-induced programmed cell death through endoplasmic reticulum stress–cell death signaling pathway in tobacco cells

(2013) Hua Xu et al.   JOURNAL OF PLANT PHYSIOLOGY

Drosophila XBP1 Expression Reporter Marks Cells under Endoplasmic Reticulum Stress and with High Protein Secretory Load

(2013) Hyung Don Ryoo et al.   PLoS One

The Unfolded Protein Response in Secretory Cell Function

(2012) Kristin A. Moore et al.   Annual Review of Genetics

Tolerance of Infections

(2012) Janelle S. Ayres et al.   Annual Review of Immunology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

(2012) Carl Herrmann et al.   NUCLEIC ACIDS RESEARCH

Disease Tolerance as a Defense Strategy

(2012) R. Medzhitov et al.   SCIENCE

An Orchestrated Program Regulating Secretory Pathway Genes and Cargos by the Transmembrane Transcription Factor CREB-H

(2012) Sónia Barbosa et al.   TRAFFIC

Drosophila EGFR pathway coordinates stem cell proliferation and gut remodeling following infection

(2011) Nicolas Buchon et al.   BMC BIOLOGY

A quantitative method for detection of spliced X-box binding protein-1 (XBP1) mRNA as a measure of endoplasmic reticulum (ER) stress

(2011) Annemarie van Schadewijk et al.   CELL STRESS & CHAPERONES

Multiple TGF-β Superfamily Signals Modulate the Adult Drosophila Immune Response

(2011) Rebecca I. Clark et al.   CURRENT BIOLOGY

Comparative pathology of bacteria in the genus Providencia to a natural host, Drosophila melanogaster

(2011) Madeline R. Galac et al.   MICROBES AND INFECTION

The CrebA/Creb3-like transcription factors are major and direct regulators of secretory capacity

(2010) Rebecca M. Fox et al.   JOURNAL OF CELL BIOLOGY

Genetic variation in resistance, but not tolerance, to a protozoan parasite in the monarch butterfly

(2010) T. Lefevre et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Drosophila Intestinal Response to Bacterial Infection: Activation of Host Defense and Stem Cell Proliferation

(2009) Nicolas Buchon et al.   Cell Host & Microbe

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Infection-induced proteolysis of PGRP-LC controls the IMD activation and melanization cascades in Drosophila

(2008) Rebecca L. Schmidt et al.   FASEB JOURNAL

Sensing of 'danger signals' and pathogen-associated molecular patterns defines binary signaling pathways 'upstream' of Toll

(2008) Laure El Chamy et al.   NATURE IMMUNOLOGY