EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos
Authors
Keywords
Embryos, Data visualization, Zebrafish, Neural crest, Vision, Fluorescence imaging, Epithelium, Data mining
Journal
PLoS Computational Biology
Volume 14, Issue 4, Pages e1006128
Publisher
Public Library of Science (PLoS)
Online
2018-04-20
DOI
10.1371/journal.pcbi.1006128
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- TrackMate: An open and extensible platform for single-particle tracking
- (2017) Jean-Yves Tinevez et al. METHODS
- An objective comparison of cell-tracking algorithms
- (2017) Vladimír Ulman et al. NATURE METHODS
- Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos
- (2016) Johannes Stegmaier et al. DEVELOPMENTAL CELL
- Software tools for single-cell tracking and quantification of cellular and molecular properties
- (2016) Oliver Hilsenbeck et al. NATURE BIOTECHNOLOGY
- TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images
- (2016) Alessandro Bria et al. NATURE METHODS
- WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration
- (2015) Anthony Santella et al. BMC BIOINFORMATICS
- Light-sheet fluorescence microscopy for quantitative biology
- (2015) Ernst H K Stelzer NATURE METHODS
- Whole-animal functional and developmental imaging with isotropic spatial resolution
- (2015) Raghav K Chhetri et al. NATURE METHODS
- BigDataViewer: visualization and processing for large image data sets
- (2015) Tobias Pietzsch et al. NATURE METHODS
- Efficient processing and analysis of large-scale light-sheet microscopy data
- (2015) Fernando Amat et al. Nature Protocols
- Graphical model for joint segmentation and tracking of multiple dividing cells
- (2014) Martin Schiegg et al. BIOINFORMATICS
- A benchmark for comparison of cell tracking algorithms
- (2014) Martin Maška et al. BIOINFORMATICS
- Quantitative 4D analyses of epithelial folding during Drosophila gastrulation
- (2014) Zia Khan et al. DEVELOPMENT
- Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
- (2014) Fernando Amat et al. NATURE METHODS
- 3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy
- (2014) Liang Gao et al. Nature Protocols
- Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks
- (2014) Johannes Stegmaier et al. PLoS One
- Chase-and-run between adjacent cell populations promotes directional collective migration
- (2013) Eric Theveneau et al. NATURE CELL BIOLOGY
- Imaging Morphogenesis: Technological Advances and Biological Insights
- (2013) P. J. Keller SCIENCE
- High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics
- (2013) Benjamin Schmid et al. Nature Communications
- Sox10-dependent neural crest origin of olfactory microvillous neurons in zebrafish
- (2013) Ankur Saxena et al. eLife
- Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos
- (2012) C. A. Giurumescu et al. DEVELOPMENT
- Quantitative Analysis of Embryogenesis: A Perspective for Light Sheet Microscopy
- (2012) Burkhard Höckendorf et al. DEVELOPMENTAL CELL
- Icy: an open bioimage informatics platform for extended reproducible research
- (2012) Fabrice de Chaumont et al. NATURE METHODS
- Biological imaging software tools
- (2012) Kevin W Eliceiri et al. NATURE METHODS
- Multiview light-sheet microscope for rapid in toto imaging
- (2012) Uros Krzic et al. NATURE METHODS
- Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain
- (2012) L. Silvestri et al. OPTICS EXPRESS
- Forces Driving Epithelial Spreading in Zebrafish Gastrulation
- (2012) M. Behrndt et al. SCIENCE
- Advances in multiphoton microscopy for imaging embryos
- (2011) Willy Supatto et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- 4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies
- (2010) Jim Swoger et al. Journal of Biophotonics
- Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy
- (2010) N. Olivier et al. SCIENCE
- Fate Mapping Embryonic Blood in Zebrafish: Multi- and Unipotential Lineages Are Segregated at Gastrulation
- (2009) Rachel M. Warga et al. DEVELOPMENTAL CELL
- Tracking in cell and developmental biology
- (2009) Erik Meijering et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration
- (2008) A. McMahon et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started