Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

CognitionMaster: an object-based image analysis framework

(2013) Stephan Wienert et al.   Diagnostic Pathology

Validation of various adaptive threshold methods of segmentation applied to follicular lymphoma digital images stained with 3,3’-Diaminobenzidine&Haematoxylin

(2013) Anna Korzynska et al.   Diagnostic Pathology

Automated Processing of Zebrafish Imaging Data: A Survey

(2013) Ralf Mikut et al.   Zebrafish

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics

(2013) Benjamin Schmid et al.   Nature Communications

Determining similarity in histological images using graph-theoretic description and matching methods for content-based image retrieval in medical diagnostics

(2012) Harshita Sharma et al.   Diagnostic Pathology

Icy: an open bioimage informatics platform for extended reproducible research

(2012) Fabrice de Chaumont et al.   NATURE METHODS

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Learning regions of interest from low level maps in virtual microscopy

(2011) David Romo et al.   Diagnostic Pathology

Reconstructing embryonic development

(2010) Khaled Khairy et al.   GENESIS

Distance Regularized Level Set Evolution and Its Application to Image Segmentation

(2010) Chunming Li et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

(2010) N. Olivier et al.   SCIENCE

Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry

(2009) David Svoboda et al.   CYTOMETRY PART A

Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images

(2009) Y. Al-Kofahi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis

(2009) C. Zanella et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Tracking in cell and developmental biology

(2009) Erik Meijering et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Segmentation of Clustered Nuclei With Shape Markers and Marking Function

(2008) Jierong Cheng et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE