An objective comparison of cell-tracking algorithms

Network Flow Integer Programming to Track Elliptical Cells in Time-Lapse Sequences

(2017) Engin Turetken et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy

(2017) David Svoboda et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Quantitative 3D analysis of complex single border cell behaviors in coordinated collective cell migration

(2017) Adam Cliffe et al.   Nature Communications

Automatic Stem Cell Detection in Microscopic Whole Mouse Cryo-Imaging

(2016) Patiwet Wuttisarnwattana et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye

(2015) Alexandre Cecilien Dufour et al.   IEEE SIGNAL PROCESSING MAGAZINE

Global Linking of Cell Tracks Using the Viterbi Algorithm

(2015) Klas E. G. Magnusson et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Cell Tracking Accuracy Measurement Based on Comparison of Acyclic Oriented Graphs

(2015) Pavel Matula et al.   PLoS One

Graphical model for joint segmentation and tracking of multiple dividing cells

(2014) Martin Schiegg et al.   BIOINFORMATICS

A benchmark for comparison of cell tracking algorithms

(2014) Martin Maška et al.   BIOINFORMATICS

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

(2014) Fernando Amat et al.   NATURE METHODS

Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan–Vese Model

(2013) M. Maska et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

PhagoSight: An Open-Source MATLAB® Package for the Analysis of Fluorescent Neutrophil and Macrophage Migration in a Zebrafish Model

(2013) Katherine M. Henry et al.   PLoS One

Cell Segmentation: 50 Years Down the Road [Life Sciences]

(2012) Erik Meijering   IEEE SIGNAL PROCESSING MAGAZINE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy

(2011) A Dufour et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy

(2010) O. Dzyubachyk et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Flow-Based Cytometric Analysis of Cell Cycle via Simulated Cell Populations

(2010) M. Rowan Brown et al.   PLoS Computational Biology

Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time

(2009) N. Harder et al.   GENOME RESEARCH

Cell population tracking and lineage construction with spatiotemporal context

(2008) Kang Li et al.   MEDICAL IMAGE ANALYSIS

Automated analysis of embryonic gene expression with cellular resolution in C. elegans

(2008) John Isaac Murray et al.   NATURE METHODS

Microscopic imaging techniques for drug discovery

(2007) Andrew Bullen   NATURE REVIEWS DRUG DISCOVERY