Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm

On the statistical analysis of single cell lineage trees

(2018) Tanja Stadler et al.   JOURNAL OF THEORETICAL BIOLOGY

Human haematopoietic stem cell lineage commitment is a continuous process

(2017) Lars Velten et al.   NATURE CELL BIOLOGY

Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios

(2016) Philipp S. Hoppe et al.   NATURE

Challenges in long-term imaging and quantification of single-cell dynamics

(2016) Stavroula Skylaki et al.   NATURE BIOTECHNOLOGY

Software tools for single-cell tracking and quantification of cellular and molecular properties

(2016) Oliver Hilsenbeck et al.   NATURE BIOTECHNOLOGY

Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements

(2016) Sahand Hormoz et al.   Cell Systems

Factor graph analysis of live cell–imaging data reveals mechanisms of cell fate decisions

(2015) Theresa Niederberger et al.   BIOINFORMATICS

Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy

(2015) Michael K. Strasser et al.   BMC Systems Biology

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

(2015) Franziska Paul et al.   CELL

Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages

(2015) J.-E. Dietrich et al.   EMBO REPORTS

Dichotomous noise models of gene switches

(2015) Davit. A. Potoyan et al.   JOURNAL OF CHEMICAL PHYSICS

Human definitive haemogenic endothelium and arterial vascular endothelium represent distinct lineages

(2015) Andrea Ditadi et al.   NATURE CELL BIOLOGY

Network plasticity of pluripotency transcription factors in embryonic stem cells

(2015) Adam Filipczyk et al.   NATURE CELL BIOLOGY

Quantitative Single-Cell Approaches to Stem Cell Research

(2014) Martin Etzrodt et al.   Cell Stem Cell

Mathematical approaches to modeling development and reprogramming

(2014) R. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing cellular processes by long-term live imaging - historic problems and current solutions

(2013) D. L. Coutu et al.   JOURNAL OF CELL SCIENCE

Erratum: Corrigendum: Global quantification of mammalian gene expression control

(2013) Björn Schwanhäusser et al.   NATURE

Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation

(2013) H. Y. Kueh et al.   SCIENCE

Stability and Multiattractor Dynamics of a Toggle Switch Based on a Two-Stage Model of Stochastic Gene Expression

(2012) Michael Strasser et al.   BIOPHYSICAL JOURNAL

Cancer Stem Cells: Impact, Heterogeneity, and Uncertainty

(2012) Jeffrey A. Magee et al.   CANCER CELL

Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase

(2012) Yosef Buganim et al.   CELL

Multi-scale modeling of GMP differentiation based on single-cell genealogies

(2012) Carsten Marr et al.   FEBS Journal

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast

(2012) Sami Hocine et al.   NATURE METHODS

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Activation-Induced B Cell Fates Are Selected by Intracellular Stochastic Competition

(2012) K. R. Duffy et al.   SCIENCE

Pulsed Feedback Defers Cellular Differentiation

(2012) Joe H. Levine et al.   PLOS BIOLOGY

Stochastic State Transitions Give Rise to Phenotypic Equilibrium in Populations of Cancer Cells

(2011) Piyush B. Gupta et al.   CELL

Mathematical modelling of stem cell differentiation: the PU.1–GATA-1 interaction

(2011) Campbell Duff et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Dynamic niches in the origination and differentiation of haematopoietic stem cells

(2011) Leo D. Wang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network

(2011) Jan Krumsiek et al.   PLoS One

Modified variational Bayes EM estimation of hidden Markov tree model of cell lineages

(2009) Victor Olariu et al.   BIOINFORMATICS

A novel view on stem cell development: analysing the shape of cellular genealogies

(2009) I. Glauche et al.   CELL PROLIFERATION

A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1-GATA-1 interaction

(2009) P. Bokes et al.   MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA

Continuous single-cell imaging of blood generation from haemogenic endothelium

(2009) Hanna M. Eilken et al.   NATURE

Direct cell reprogramming is a stochastic process amenable to acceleration

(2009) Jacob Hanna et al.   NATURE

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

A single-cell pedigree analysis of alternative stochastic lymphocyte fates

(2009) E. D. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hematopoietic Cytokines Can Instruct Lineage Choice

(2009) M. A. Rieger et al.   SCIENCE

Hematopoiesis: An Evolving Paradigm for Stem Cell Biology

(2008) Stuart H. Orkin et al.   CELL