Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

(2014) Fernando Amat et al.   NATURE METHODS

A Model-Based Analysis of Culture-Dependent Phenotypes of mESCs

(2014) Maria Herberg et al.   PLoS One

An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy

(2013) Felix Buggenthin et al.   BMC BIOINFORMATICS

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis

(2013) Arun Shivanandan et al.   BMC BIOINFORMATICS

Neural Stem Cells: Generating and Regenerating the Brain

(2013) Fred H. Gage et al.   NEURON

Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation

(2013) H. Y. Kueh et al.   SCIENCE

Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions

(2012) N. Scherf et al.   BIOINFORMATICS

Stability and Multiattractor Dynamics of a Toggle Switch Based on a Two-Stage Model of Stochastic Gene Expression

(2012) Michael Strasser et al.   BIOPHYSICAL JOURNAL

Cancer Stem Cells: Impact, Heterogeneity, and Uncertainty

(2012) Jeffrey A. Magee et al.   CANCER CELL

Multi-scale modeling of GMP differentiation based on single-cell genealogies

(2012) Carsten Marr et al.   FEBS Journal

Normalizing for individual cell population context in the analysis of high-content cellular screens

(2011) Bettina Knapp et al.   BMC BIOINFORMATICS

Stochastic State Transitions Give Rise to Phenotypic Equilibrium in Populations of Cancer Cells

(2011) Piyush B. Gupta et al.   CELL

Continuous live imaging of adult neural stem cell division and lineage progression in vitro

(2011) M. R. Costa et al.   DEVELOPMENT

Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network

(2011) Jan Krumsiek et al.   PLoS One

Computational prediction of neural progenitor cell fates

(2010) Andrew R Cohen et al.   NATURE METHODS

A Fresh Look at iPS Cells

(2009) Shinya Yamanaka   CELL

Learning from Imbalanced Data

(2009) Haibo He et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Continuous single-cell imaging of blood generation from haemogenic endothelium

(2009) Hanna M. Eilken et al.   NATURE

Population context determines cell-to-cell variability in endocytosis and virus infection

(2009) Berend Snijder et al.   NATURE

Hematopoietic Cytokines Can Instruct Lineage Choice

(2009) M. A. Rieger et al.   SCIENCE

Hematopoietic cytokines

(2008) D. Metcalf   BLOOD

Stem Cells and Niches: Mechanisms That Promote Stem Cell Maintenance throughout Life

(2008) Sean J. Morrison et al.   CELL

Hematopoiesis: An Evolving Paradigm for Stem Cell Biology

(2008) Stuart H. Orkin et al.   CELL

Imaging stem-cell-driven regeneration in mammals

(2008) Timm Schroeder   NATURE