Structural basis for terminal loop recognition and stimulation of pri-miRNA-18a processing by hnRNP A1

SRSF3 recruits DROSHA to the basal junction of primary microRNAs

(2018) Kijun Kim et al.   RNA

Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation

(2017) Christine Roden et al.   GENOME RESEARCH

A structural map of oncomiR-1 at single-nucleotide resolution

(2017) Saikat Chakraborty et al.   NUCLEIC ACIDS RESEARCH

Heme enables proper positioning of Drosha and DGCR8 on primary microRNAs

(2017) Alexander C. Partin et al.   Nature Communications

Genetic variation and RNA structure regulate microRNA biogenesis

(2017) Noemi Fernandez et al.   Nature Communications

Tandem hnRNP A1 RNA recognition motifs act in concert to repress the splicing of survival motor neuron exon 7

(2017) Irene Beusch et al.   eLife

Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer

(2016) Yu Chen et al.   NUCLEIC ACIDS RESEARCH

Lin28a uses distinct mechanisms of binding to RNA and affects miRNA levels positively and negatively

(2016) Jakub Stanislaw Nowak et al.   RNA

Metainference: A Bayesian inference method for heterogeneous systems

(2016) M. Bonomi et al.   Science Advances

Functional Anatomy of the Human Microprocessor

(2015) Tuan Anh Nguyen et al.   CELL

A Biogenesis Step Upstream of Microprocessor Controls miR-17∼92 Expression

(2015) Peng Du et al.   CELL

The First Crystal Structure of the UP1 Domain of hnRNP A1 Bound to RNA Reveals a New Look for an Old RNA Binding Protein

(2015) Christopher E. Morgan et al.   JOURNAL OF MOLECULAR BIOLOGY

The Menu of Features that Define Primary MicroRNAs and Enable De Novo Design of MicroRNA Genes

(2015) Wenwen Fang et al.   MOLECULAR CELL

A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings

(2014) Carlo Camilloni et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MicroRNA miR-92a-1 biogenesis and mRNA targeting is modulated by a tertiary contact within the miR-17∼92 microRNA cluster

(2014) Steven G. Chaulk et al.   NUCLEIC ACIDS RESEARCH

NMR approaches for structural analysis of multidomain proteins and complexes in solution

(2014) Christoph Göbl et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Trim25 Is an RNA-Specific Activator of Lin28a/TuT4-Mediated Uridylation

(2014) Nila Roy Choudhury et al.   Cell Reports

Efficient Detection of Hydrogen Bonds in Dynamic Regions of RNA by Sensitivity-Optimized NMR Pulse Sequences

(2013) Andre Dallmann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Terminal loop-mediated regulation of miRNA biogenesis: selectivity and mechanisms

(2013) Virginia Castilla-Llorente et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing

(2013) Vincent C. Auyeung et al.   CELL

PLUMED 2: New feathers for an old bird

(2013) Gareth A. Tribello et al.   COMPUTER PHYSICS COMMUNICATIONS

The MicroRNA-17-92 Family of MicroRNA Clusters in Development and Disease

(2012) Carla P. Concepcion et al.   CANCER JOURNAL

Roles for MicroRNAs in Conferring Robustness to Biological Processes

(2012) Margaret S. Ebert et al.   CELL

New developments in theATSASprogram package for small-angle scattering data analysis

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Solution structure of the two RNA recognition motifs of hnRNP A1 using segmental isotope labeling: how the relative orientation between RRMs influences the nucleic acid binding topology

(2012) Pierre Barraud et al.   JOURNAL OF BIOMOLECULAR NMR

hnRNP A1 Proofreads 3′ Splice Site Recognition by U2AF

(2012) Joao Paulo Tavanez et al.   MOLECULAR CELL

Pri-miR-17-92a transcript folds into a tertiary structure and autoregulates its processing

(2012) S. Chakraborty et al.   RNA

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Molecular Basis for Interaction of let-7 MicroRNAs with Lin28

(2011) Yunsun Nam et al.   CELL

Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF

(2011) Cameron D. Mackereth et al.   NATURE

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation

(2011) Noemí Fernández et al.   NUCLEIC ACIDS RESEARCH

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An Efficient Protocol for NMR-Spectroscopy-Based Structure Determination of Protein Complexes in Solution

(2010) Bernd Simon et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

The widespread regulation of microRNA biogenesis, function and decay

(2010) Jacek Krol et al.   NATURE REVIEWS GENETICS

Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis

(2010) Gracjan Michlewski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs

(2009) Michele Trabucchi et al.   NATURE

Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops

(2008) Gracjan Michlewski et al.   MOLECULAR CELL

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

NMR: prediction of molecular alignment from structure using the PALES software

(2008) Markus Zweckstetter   Nature Protocols