Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
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Title
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Authors
Keywords
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Journal
Nature Communications
Volume 9, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-01-16
DOI
10.1038/s41467-017-02235-3
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Note: Only part of the references are listed.- A global ocean atlas of eukaryotic genes
- (2018) Quentin Carradec et al. Nature Communications
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- (2017) Adriana Alberti et al. Scientific Data
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- (2017) Jean-François Mangot et al. Scientific Reports
- A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts)
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- (2016) Thomas Vannier et al. Scientific Reports
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- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes
- (2015) A. Z. Worden et al. SCIENCE
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- (2015) C. de Vargas et al. SCIENCE
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- (2015) G. Lima-Mendez et al. SCIENCE
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- (2015) Stéphane Pesant et al. Scientific Data
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- (2014) Sarah L. C. Giering et al. NATURE
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- Single cell genome analysis of an uncultured heterotrophic stramenopile
- (2014) Rajat S. Roy et al. Scientific Reports
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- (2013) Ramon Massana et al. ISME Journal
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- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
- (2013) B. K. Swan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3
- (2010) Fernando Gómez et al. ENVIRONMENTAL MICROBIOLOGY
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- Grazing rates and functional diversity of uncultured heterotrophic flagellates
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