Survey of the green picoalga Bathycoccus genomes in the global ocean

Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean

(2016) Melinda P. Simmons et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Single-cell genome sequencing: current state of the science

(2016) Charles Gawad et al.   NATURE REVIEWS GENETICS

A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri

(2016) Sheree Yau et al.   PLoS Pathogens

Subsurface Chlorophyll Maximum Layers: Enduring Enigma or Mystery Solved?

(2015) John J. Cullen   Annual Review of Marine Science

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and AntarcticMicromonasPopulations

(2015) Melinda P. Simmons et al.   MOLECULAR BIOLOGY AND EVOLUTION

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

(2015) Johan Decelle et al.   Molecular Ecology Resources

Capturing prokaryotic dark matter genomes

(2015) Cyrielle Gasc et al.   RESEARCH IN MICROBIOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Environmental characteristics of Agulhas rings affect interocean plankton transport

(2015) E. Villar et al.   SCIENCE

Genes from scratch – the evolutionary fate of de novo genes

(2015) Christian Schlötterer   TRENDS IN GENETICS

Importance of salt fingering for new nitrogen supply in the oligotrophic ocean

(2015) B. Fernández-Castro et al.   Nature Communications

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

The unique trace metal and mixed layer conditions of the Costa Rica upwelling dome support a distinct and dense community ofSynechococcus

(2014) Nathan A. Ahlgren et al.   LIMNOLOGY AND OCEANOGRAPHY

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model

(2014) F. L. Hellweger et al.   SCIENCE

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity

(2013) Adam Monier et al.   ISME Journal

Biogeography of the uncultured marine picoeukaryote MAST-4: temperature-driven distribution patterns

(2013) Raquel Rodríguez-Martínez et al.   ISME Journal

Genetic delineation between and within the widespread coccolithophore morpho-speciesEmiliania huxleyiandGephyrocapsa oceanica(Haptophyta)

(2013) El Mahdi Bendif et al.   JOURNAL OF PHYCOLOGY

Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus

(2013) Lillian G. Acuña et al.   PLoS One

Morphology, Genome Plasticity, and Phylogeny in the Genus Ostreococcus Reveal a Cryptic Species, O. mediterraneus sp. nov. (Mamiellales, Mamiellophyceae)

(2013) Lucie Subirana et al.   PROTIST

Distribution Patterns and Phylogeny of Marine Stramenopiles in the North Pacific Ocean

(2012) Yun-Chi Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Patterns and architecture of genomic islands in marine bacteria

(2012) Beatriz Fernández-Gómez et al.   BMC GENOMICS

Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics

(2012) David Wilkins et al.   ENVIRONMENTAL MICROBIOLOGY

Polyclonality of Concurrent Natural Populations of Alteromonas macleodii

(2012) Aitor Gonzaga et al.   Genome Biology and Evolution

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A journey from reductionist to systemic cell biology aboard the schooner Tara

(2012) Eric Karsenti   MOLECULAR BIOLOGY OF THE CELL

Proto-genes and de novo gene birth

(2012) Anne-Ruxandra Carvunis et al.   NATURE

Genomic sequencing of uncultured microorganisms from single cells

(2012) Roger S. Lasken   NATURE REVIEWS MICROBIOLOGY

Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling

(2012) Daniel Vaulot et al.   PLoS One

Microbial oceanography of anoxic oxygen minimum zones

(2012) O. Ulloa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

(2012) Hervé Moreau et al.   GENOME BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus

(2011) Elif Demir-Hilton et al.   ISME Journal

Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem

(2011) Silvana Collado-Fabbri et al.   LIMNOLOGY AND OCEANOGRAPHY

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

(2011) Hamidreza Chitsaz et al.   NATURE BIOTECHNOLOGY

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Capturing diversity of marine heterotrophic protists: one cell at a time

(2010) Jane L Heywood et al.   ISME Journal

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Molecular Phylogeny and Classification of the Mamiellophyceae class. nov. (Chlorophyta) based on Sequence Comparisons of the Nuclear- and Plastid-encoded rRNA Operons

(2009) Birger Marin et al.   PROTIST

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Ecological niche partitioning in the picoplanktonic green algaMicromonas pusilla: evidence from environmental surveys using phylogenetic probes

(2008) Elodie Foulon et al.   ENVIRONMENTAL MICROBIOLOGY

Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide

(2008) Annette W. Coleman   MOLECULAR PHYLOGENETICS AND EVOLUTION

Annotating genomes with massive-scale RNA sequencing

(2008) France Denoeud et al.   GENOME BIOLOGY