Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
出版年份 2018 全文链接
标题
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-01-16
DOI
10.1038/s41467-017-02235-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A global ocean atlas of eukaryotic genes
- (2018) Quentin Carradec et al. Nature Communications
- Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
- (2017) Adriana Alberti et al. Scientific Data
- Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
- (2017) Jean-François Mangot et al. Scientific Reports
- A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts)
- (2016) Romain Derelle et al. MOLECULAR BIOLOGY AND EVOLUTION
- Plankton networks driving carbon export in the oligotrophic ocean
- (2016) Lionel Guidi et al. NATURE
- Survey of the green picoalga Bathycoccus genomes in the global ocean
- (2016) Thomas Vannier et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes
- (2015) A. Z. Worden et al. SCIENCE
- Eukaryotic plankton diversity in the sunlit ocean
- (2015) C. de Vargas et al. SCIENCE
- Determinants of community structure in the global plankton interactome
- (2015) G. Lima-Mendez et al. SCIENCE
- Open science resources for the discovery and analysis of Tara Oceans data
- (2015) Stéphane Pesant et al. Scientific Data
- Reconciliation of the carbon budget in the ocean’s twilight zone
- (2014) Sarah L. C. Giering et al. NATURE
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- Single cell genome analysis of an uncultured heterotrophic stramenopile
- (2014) Rajat S. Roy et al. Scientific Reports
- Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles
- (2013) Ramon Massana et al. ISME Journal
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
- (2013) B. K. Swan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogeny of Heterokonta: Incisomonas marina, a uniciliate gliding opalozoan related to Solenicola (Nanomonadea), and evidence that Actinophryida evolved from raphidophytes
- (2012) Thomas Cavalier-Smith et al. EUROPEAN JOURNAL OF PROTISTOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Global biogeography of SAR11 marine bacteria
- (2012) Mark V Brown et al. Molecular Systems Biology
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Genomic sequencing of uncultured microorganisms from single cells
- (2012) Roger S. Lasken NATURE REVIEWS MICROBIOLOGY
- Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
- (2012) A. Marchetti et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Unveiling in situ interactions between marine protists and bacteria through single cell sequencing
- (2011) Manuel Martinez-Garcia et al. ISME Journal
- Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
- (2011) Hamidreza Chitsaz et al. NATURE BIOTECHNOLOGY
- Emerging Diversity within Chrysophytes, Choanoflagellates and Bicosoecids Based on Molecular Surveys
- (2011) Javier del Campo et al. PROTIST
- Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
- (2011) B. K. Swan et al. SCIENCE
- Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
- (2011) H. S. Yoon et al. SCIENCE
- A bacterial proteorhodopsin proton pump in marine eukaryotes
- (2011) Claudio H. Slamovits et al. Nature Communications
- A Holistic Approach to Marine Eco-Systems Biology
- (2011) Eric Karsenti et al. PLOS BIOLOGY
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3
- (2010) Fernando Gómez et al. ENVIRONMENTAL MICROBIOLOGY
- Capturing diversity of marine heterotrophic protists: one cell at a time
- (2010) Jane L Heywood et al. ISME Journal
- Grazing rates and functional diversity of uncultured heterotrophic flagellates
- (2009) Ramon Massana et al. ISME Journal
- Taxonomic resolution, ecotypes and the biogeography ofProchlorococcus
- (2008) Adam C. Martiny et al. ENVIRONMENTAL MICROBIOLOGY
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- Massive Horizontal Gene Transfer in Bdelloid Rotifers
- (2008) E. A. Gladyshev et al. SCIENCE
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started