Integrated analysis of methylome, transcriptome and miRNAome of three pig breeds
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrated analysis of methylome, transcriptome and miRNAome of three pig breeds
Authors
Keywords
-
Journal
Epigenomics
Volume 10, Issue 5, Pages 597-612
Publisher
Future Medicine Ltd
Online
2018-04-25
DOI
10.2217/epi-2017-0087
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing
- (2016) A. M. Martínez-Montes et al. ANIMAL GENETICS
- Discovery of porcine miRNA-196a/b may influence porcine adipogenesis in longissimus dorsi muscle by miRNA sequencing
- (2016) Linqing Liu et al. ANIMAL GENETICS
- Methylation of miR-145a-5p promoter mediates adipocytes differentiation
- (2016) Jingjing Du et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Minibrain and Wings apart control organ growth and tissue patterning through down-regulation of Capicua
- (2016) Liu Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Aberrant methylation-mediated silencing of microRNAs contributes to HPV-induced anchorage independence
- (2016) Saskia M. Wilting et al. Oncotarget
- Genomic analysis reveals selection in Chinese native black pig
- (2016) Yuhua Fu et al. Scientific Reports
- Genome-wide analysis of DNA methylation in obese, lean and miniature pig breeds
- (2016) Yalan Yang et al. Scientific Reports
- Genome-wide landscape of DNA methylomes and their relationship with mRNA and miRNA transcriptomes in oxidative and glycolytic skeletal muscles
- (2016) Linyuan Shen et al. Scientific Reports
- An SOD1 deficiency enhances lipid droplet accumulation in the fasted mouse liver by aborting lipophagy
- (2015) Toshihiro Kurahashi et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Changes of hepatic lipid mediators associated with intake of high-fat diet for 12 weeks in endotoxemic rats using LC-ESI-MS/MS
- (2015) Aya Nishiokada et al. CLINICAL NUTRITION
- Genome-wide analysis of DNA methylation in pigs using reduced representation bisulfite sequencing
- (2015) Minkyeung Choi et al. DNA RESEARCH
- Epigenomic Landscape of Human Fetal Brain, Heart, and Liver
- (2015) Liying Yan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PANTHER version 10: expanded protein families and functions, and analysis tools
- (2015) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Transcriptome Analysis of Liangshan Pig Muscle Development at the Growth Curve Inflection Point and Asymptotic Stages Using Digital Gene Expression Profiling
- (2015) Linyuan Shen et al. PLoS One
- Genome-wide analysis of DNA methylation and gene expression patterns in purified, uncultured human liver cells and activated hepatic stellate cells
- (2015) Adil El Taghdouini et al. Oncotarget
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Marked methylation changes in intestinal genes during the perinatal period of preterm neonates
- (2014) Fei Gao et al. BMC GENOMICS
- Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs
- (2014) Long Jin et al. BMC GENOMICS
- Mice lacking G0S2 are lean and cold-tolerant
- (2014) Tian Ma et al. CANCER BIOLOGY & THERAPY
- Tissue expression pattern and polymorphism of G0S2 gene in porcine
- (2014) Yanzhi Jiang et al. GENE
- Identification of Differentially Expressed miRNAs between White and Black Hair Follicles by RNA-Sequencing in the Goat (Capra hircus)
- (2014) Zhenyang Wu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Taurine supplementation does not decrease homocysteine levels and liver injury induced by a choline-deficient diet
- (2014) Rafael Deminice et al. LIFE SCIENCES
- The DNA methylation landscape of human early embryos
- (2014) Hongshan Guo et al. NATURE
- High-resolution genome-wide DNA methylation maps of mouse primary female dermal fibroblasts and keratinocytes
- (2014) Raghunath Chatterjee et al. Epigenetics & Chromatin
- Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication
- (2014) Mingzhou Li et al. Scientific Reports
- Genome-wide DNA Methylation Profiles and Their Relationships with mRNA and the microRNA Transcriptome in Bovine Muscle Tissue (Bos taurine)
- (2014) Yong-Zhen Huang et al. Scientific Reports
- Role of Thyroid Hormone Receptor Subtypes α and β on Gene Expression in the Cerebral Cortex and Striatum of Postnatal Mice
- (2013) Pilar Gil-Ibañez et al. ENDOCRINOLOGY
- Targeting of Acyl-CoA synthetase 5 decreases jejunal fatty acid activation with no effect on dietary long-chain fatty acid absorption
- (2013) Nahum Meller et al. Lipids in Health and Disease
- Genome-Wide DNA Methylation Changes between the Superficial and Deep Backfat Tissues of the Pig
- (2012) Mingzhou Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- A unique regulatory phase of DNA methylation in the early mammalian embryo
- (2012) Zachary D. Smith et al. NATURE
- DNA methylome analysis using short bisulfite sequencing data
- (2012) Felix Krueger et al. NATURE METHODS
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- An atlas of DNA methylomes in porcine adipose and muscle tissues
- (2012) Mingzhou Li et al. Nature Communications
- Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia
- (2012) Altuna Akalin et al. PLoS Genetics
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome
- (2011) Zhixi Su et al. BMC GENOMICS
- Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
- (2011) G. C. Hon et al. GENOME RESEARCH
- Ovine corpus luteum proteins, with functions including oxidative stress and lipid metabolism, show complex alterations during implantation
- (2011) Mitra Arianmanesh et al. JOURNAL OF ENDOCRINOLOGY
- Dynamic changes in the human methylome during differentiation
- (2010) L. Laurent et al. GENOME RESEARCH
- Whole genome DNA methylation analysis based on high throughput sequencing technology
- (2010) Ning Li et al. METHODS
- Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing
- (2010) Chanseok Shin et al. MOLECULAR CELL
- Quantitative comparison of genome-wide DNA methylation mapping technologies
- (2010) Christoph Bock et al. NATURE BIOTECHNOLOGY
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
- (2009) Likun Wang et al. BIOINFORMATICS
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
- (2009) Rafael A Irizarry et al. NATURE GENETICS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Genetic polymorphisms and preliminary association analysis with production traits of the porcine SLC27A4 gene
- (2008) Z. Y. Xu et al. MOLECULAR BIOLOGY REPORTS
- A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
- (2008) Thomas A Down et al. NATURE BIOTECHNOLOGY
- Discovering microRNAs from deep sequencing data using miRDeep
- (2008) Marc R Friedländer et al. NATURE BIOTECHNOLOGY
- Epigenetic events in mammalian germ-cell development: reprogramming and beyond
- (2008) Hiroyuki Sasaki et al. NATURE REVIEWS GENETICS
- The role of oxygen availability in embryonic development and stem cell function
- (2008) M. Celeste Simon et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More