DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis

Cap-n-Collar Promotes Tissue Regeneration by Regulating ROS and JNK Signaling in the Drosophila melanogaster Wing Imaginal Disc

(2017) Amanda R. Brock et al.   GENETICS

Chromatin state changes during neural development revealed by in vivo cell-type specific profiling

(2017) Owen J. Marshall et al.   Nature Communications

Cap-n-Collar Promotes Tissue Regeneration by Regulating ROS and JNK Signaling in the Drosophila melanogaster Wing Imaginal Disc

(2017) Amanda R. Brock et al.   GENETICS

The legacy of Drosophila imaginal discs

(2016) Jorge V. Beira et al.   CHROMOSOMA

Data analysis algorithm for DamID-seq profiling of chromatin proteins in Drosophila melanogaster

(2016) Daniil A. Maksimov et al.   CHROMOSOME RESEARCH

An Ectopic Network of Transcription Factors Regulated by Hippo Signaling Drives Growth and Invasion of a Malignant Tumor Model

(2016) Mardelle Atkins et al.   CURRENT BIOLOGY

Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development

(2016) Vincent Loubiere et al.   NATURE GENETICS

Cell-type-specific profiling of protein–DNA interactions without cell isolation using targeted DamID with next-generation sequencing

(2016) Owen J Marshall et al.   Nature Protocols

Inducible DamID systems for genomic mapping of chromatin proteins inDrosophila

(2016) Alexey V. Pindyurin et al.   NUCLEIC ACIDS RESEARCH

Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs

(2016) Robin E Harris et al.   eLife

The transcription factor Ets21C drives tumor growth by cooperating with AP-1

(2016) Janine Toggweiler et al.   Scientific Reports

Trithorax and Polycomb group-dependent regulation: a tale of opposing activities

(2015) S. J. Geisler et al.   DEVELOPMENT

Interplay amongDrosophilatranscription factors Ets21c, Fos and Ftz-F1 drives JNK-mediated tumor malignancy

(2015) Eva Külshammer et al.   Disease Models & Mechanisms

Architectural proteins, transcription, and the three-dimensional organization of the genome

(2015) Caelin Cubeñas-Potts et al.   FEBS LETTERS

CBP binding outside of promoters and enhancers in Drosophila melanogaster

(2015) Philge Philip et al.   Epigenetics & Chromatin

ROS-Induced JNK and p38 Signaling Is Required for Unpaired Cytokine Activation during Drosophila Regeneration

(2015) Paula Santabárbara-Ruiz et al.   PLoS Genetics

Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling

(2015) Kristofer Davie et al.   PLoS Genetics

BTB-Zinc Finger Oncogenes Are Required for Ras and Notch-Driven Tumorigenesis in Drosophila

(2015) Karen Doggett et al.   PLoS One

High-resolution mapping defines the cooperative architecture of Polycomb response elements

(2014) G. A. Orsi et al.   GENOME RESEARCH

What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory

(2014) Philipp A. Steffen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

JAK/STAT pathway dysregulation in tumors: A Drosophila perspective

(2014) Marc Amoyel et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Single-Cell Dynamics of Genome-Nuclear Lamina Interactions

(2013) Jop Kind et al.   CELL

Cell-Type-Specific Profiling of Gene Expression and Chromatin Binding without Cell Isolation: Assaying RNA Pol II Occupancy in Neural Stem Cells

(2013) Tony D. Southall et al.   DEVELOPMENTAL CELL

A Network Model of the Molecular Organization of Chromatin in Drosophila

(2013) Joke G. van Bemmel et al.   MOLECULAR CELL

Molecular basis for chromatin binding and regulation of MLL5

(2013) M. Ali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CAST-ChIP Maps Cell-Type-Specific Chromatin States in the Drosophila Central Nervous System

(2013) Tamás Schauer et al.   Cell Reports

Insulators Target Active Genes to Transcription Factories and Polycomb-Repressed Genes to Polycomb Bodies

(2013) Hua-Bing Li et al.   PLoS Genetics

MBD3 Localizes at Promoters, Gene Bodies and Enhancers of Active Genes

(2013) Takashi Shimbo et al.   PLoS Genetics

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

(2012) F. A. Steiner et al.   GENOME RESEARCH

Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

(2012) W. Meuleman et al.   GENOME RESEARCH

Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

(2012) Stefan Bonn et al.   Nature Protocols

Imaginal Discs Secrete Insulin-Like Peptide 8 to Mediate Plasticity of Growth and Maturation

(2012) A. Garelli et al.   SCIENCE

Secreted Peptide Dilp8 Coordinates Drosophila Tissue Growth with Developmental Timing

(2012) J. Colombani et al.   SCIENCE

RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function

(2011) N. Moshkovich et al.   GENES & DEVELOPMENT

A cis-regulatory map of the Drosophila genome

(2011) Nicolas Nègre et al.   NATURE

Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs

(2010) Enrique Blanco et al.   BMC DEVELOPMENTAL BIOLOGY

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

(2010) Guillaume J. Filion et al.   CELL

chinmo Is a Functional Effector of the JAK/STAT Pathway that Regulates Eye Development, Tumor Formation, and Stem Cell Self-Renewal in Drosophila

(2010) Maria Sol Flaherty et al.   DEVELOPMENTAL CELL

Insulators, Not Polycomb Response Elements, Are Required for Long-Range Interactions between Polycomb Targets in Drosophila melanogaster

(2010) H.-B. Li et al.   MOLECULAR AND CELLULAR BIOLOGY

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

(2010) Peter V. Kharchenko et al.   NATURE

The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana

(2010) Roger B Deal et al.   Nature Protocols

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Determination of enriched histone modifications in non-genic portions of the human genome

(2009) Jeffrey A Rosenfeld et al.   BMC GENOMICS

Biochemical mechanisms of gene regulation by polycomb group protein complexes

(2009) Jürg Müller et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Interaction between Drosophila bZIP proteins Atf3 and Jun prevents replacement of epithelial cells during metamorphosis

(2009) P. Sekyrova et al.   DEVELOPMENT

A tumor suppressor activity of Drosophila Polycomb genes mediated by JAK-STAT signaling

(2009) Anne-Kathrin Classen et al.   NATURE GENETICS

G-TRACE: rapid Gal4-based cell lineage analysis in Drosophila

(2009) Cory J Evans et al.   NATURE METHODS

Computational approaches to study transcriptional regulation

(2008) M. Madan Babu   BIOCHEMICAL SOCIETY TRANSACTIONS