IR64: a high-quality and high-yielding mega variety

Near-isogenic lines of IR64 (Oryza sativa subsp. indica cv.) introgressed with DEEPER ROOTING 1 and STELE TRANSVERSAL AREA 1 improve rice yield formation over the background parent across three water management regimes

(2017) Vivek Deshmukh et al.   PLANT PRODUCTION SCIENCE

High Resolution Mapping of QTLs for Heat Tolerance in Rice Using a 5K SNP Array

(2017) Shanmugavadivel PS et al.   Rice

Trait Combinations That Improve Rice Yield under Drought: Sahbhagi Dhan and New Drought-Tolerant Varieties in South Asia

(2016) M.S. Anantha et al.   CROP SCIENCE

Genetic relationships among improved varieties of rice (Oryza sativa L.) in Indonesia over the last 60 years as revealed by morphological traits and DNA markers

(2016) Kadapi Muhamad et al.   GENETIC RESOURCES AND CROP EVOLUTION

The role of root size versus root efficiency in phosphorus acquisition in rice

(2016) Asako Mori et al.   JOURNAL OF EXPERIMENTAL BOTANY

From promise to application: root traits for enhanced nutrient capture in rice breeding

(2016) Matthias Wissuwa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice

(2016) Fu-Jin Wei et al.   PLANT SCIENCE

From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network

(2016) Renu Singh et al.   PLANT SCIENCE

Identification of novel major and minor QTLs associated with Xanthomonas oryzae pv. oryzae (African strains) resistance in rice (Oryza sativa L.)

(2016) Gustave Djedatin et al.   Rice

Development of Cytoplasmic Male Sterile IR24 and IR64 Using CW-CMS/Rf17 System

(2016) Kinya Toriyama et al.   Rice

Genetic Variability in Phosphorus Responses of Rice Root Phenotypes

(2016) Phanchita Vejchasarn et al.   Rice

Biofortified indica rice attains iron and zinc nutrition dietary targets in the field

(2016) Kurniawan R. Trijatmiko et al.   Scientific Reports

Advanced backcross QTL analysis reveals complicated genetic control of rice grain shape in a japonica × indica cross

(2015) Kazufumi Nagata et al.   BREEDING SCIENCE

Morphological traits associated with vegetative growth of rice (Oryza sativa L.) during the recovery phase after early-season drought

(2015) Midori Okami et al.   EUROPEAN JOURNAL OF AGRONOMY

The need for new tools and investment to improve the accuracy of selecting for grain quality in rice

(2015) Jeanaflor Crystal T. Concepcion et al.   FIELD CROPS RESEARCH

Genetic factors determining varietal differences in characters affecting yield between two rice (Oryza sativa L.) varieties, Koshihikari and IR64

(2015) Kazuhiro Ujiie et al.   GENETIC RESOURCES AND CROP EVOLUTION

Physiological mechanisms contributing to the QTL-combination effects on improved performance of IR64 rice NILs under drought

(2015) Amelia Henry et al.   JOURNAL OF EXPERIMENTAL BOTANY

Complex molecular mechanisms underlying seedling salt tolerance in rice revealed by comparative transcriptome and metabolomic profiling

(2015) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Transcriptome Analysis During Anthesis Reveals New Insights into the Molecular Basis of Heat Stress Responses in Tolerant and Sensitive Rice Varieties

(2015) Nahuel González-Schain et al.   PLANT AND CELL PHYSIOLOGY

Resilience of rice (O ryza spp.) pollen germination and tube growth to temperature stress

(2015) Onoriode Coast et al.   PLANT CELL AND ENVIRONMENT

Fine-mapping and validating qHTSF4.1 to increase spikelet fertility under heat stress at flowering in rice

(2015) Changrong Ye et al.   THEORETICAL AND APPLIED GENETICS

Farmers’ Preference for Rice Traits: Insights from Farm Surveys in Central Luzon, Philippines, 1966-2012

(2015) Alice G. Laborte et al.   PLoS One

Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits

(2015) Prashant Vikram et al.   Scientific Reports

Accelerating the development of new submergence tolerant rice varieties: the case of Ciherang-Sub1 and PSB Rc18-Sub1

(2014) Endang M. Septiningsih et al.   EUPHYTICA

qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa

(2014) Hideyuki Hirabayashi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transgenic rice expressing a codon-modified synthetic CP4-EPSPS confers tolerance to broad-spectrum herbicide, glyphosate

(2014) Sushil Chhapekar et al.   PLANT CELL REPORTS

Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding

(2014) Mariafe Calingacion et al.   PLoS One

Predicting temperature induced sterility of rice spikelets requires simulation of crop-generated microclimate

(2013) Cécile Julia et al.   EUROPEAN JOURNAL OF AGRONOMY

Zn uptake, translocation and grain Zn loading in rice (Oryza sativa L.) genotypes selected for Zn deficiency tolerance and high grain Zn

(2013) Somayanda M. Impa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Large-scale production and evaluation of marker-free indica rice IR64 expressing phytoferritin genes

(2013) Norman Oliva et al.   MOLECULAR BREEDING

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

Comparing simple root phenotyping methods on a core set of rice genotypes

(2013) R. Shrestha et al.   PLANT BIOLOGY

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic, Physiological, and Gene Expression Analyses Reveal That Multiple QTL Enhance Yield of Rice Mega-Variety IR64 under Drought

(2013) Mallikarjuna Swamy B. P. et al.   PLoS One

Global Expression Profiling of Low Temperature Induced Genes in the Chilling Tolerant Japonica Rice Jumli Marshi

(2013) Aakash Chawade et al.   PLoS One

NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars

(2013) D. Fujita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of heterotic groups for tropical Indica hybrid rice germplasm

(2013) Fangming Xie et al.   THEORETICAL AND APPLIED GENETICS

Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.)

(2013) Berta Miro et al.   Frontiers in Plant Science

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice

(2012) Rita Sharma et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Water uptake dynamics under progressive drought stress in diverse accessions of the OryzaSNP panel of rice (Oryza sativa)

(2012) Veeresh R. P. Gowda et al.   FUNCTIONAL PLANT BIOLOGY

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns

(2012) Xavier Grand et al.   PLANT BIOTECHNOLOGY JOURNAL

Positive selection pressure on rice blast resistance allelePiz-tmakes it divergent in Indian land races

(2012) S. Thakur et al.   Journal of Plant Interactions

ADAPTABILITY OF IRRIGATED RICE TO TEMPERATURE CHANGE IN SAHELIAN ENVIRONMENTS

(2011) MICHIEL E. DE VRIES et al.   EXPERIMENTAL AGRICULTURE

Rice near-isogenic-lines (NILs) contrasting for grain yield under lowland drought stress

(2011) R. Venuprasad et al.   FIELD CROPS RESEARCH

Isolation, characterization, and field evaluation of rice (Oryza sativa L., Var. IR64) mutants with altered responses to salt stress

(2011) Babak Nakhoda et al.   FIELD CROPS RESEARCH

Controlling rice bacterial blight in Africa: Needs and prospects

(2011) Valérie Verdier et al.   JOURNAL OF BIOTECHNOLOGY

Identification of QTLs for Drought-Related Traits in Alien Introgression Lines Derived from Crosses of Rice (Oryza sativa cv. IR64) × O. glaberrima under Lowland Moisture Stress

(2011) Isaac Kofi Bimpong et al.   JOURNAL OF PLANT BIOLOGY

Detection of allelic variation at the Wx locus with single-segment substitution lines in rice (Oryza sativa L.)

(2011) Bin Teng et al.   MOLECULAR BREEDING

Diversification of the Waxy Gene is Closely Related to Variations in Rice Eating and Cooking Quality

(2011) Zujian Zhang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Developing Rice with High Yield under Phosphorus Deficiency: Pup1 Sequence to Application

(2011) J. H. Chin et al.   PLANT PHYSIOLOGY

Molecular Evolution of the Rice Blast Resistance Gene Pi-ta in Invasive Weedy Rice in the USA

(2011) Seonghee Lee et al.   PLoS One

Agrobacterium mediated transformation of indica rice (Oryza sativa L.) for insect resistance

(2010) S. Ignacimuthu et al.   EUPHYTICA

Root response to aerobic conditions in rice, estimated by Comair root length scanner and scanner-based image analysis

(2010) Yoichiro Kato et al.   FIELD CROPS RESEARCH

Variation in root system architecture and drought response in rice (Oryza sativa): Phenotyping of the OryzaSNP panel in rainfed lowland fields

(2010) Amelia Henry et al.   FIELD CROPS RESEARCH

Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice

(2010) Swatismita Ray et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Quantitative Trait Loci Mapping for Leaf Length and Leaf Width in Rice cv. IR64 Derived Lines

(2010) Muhammad Farooq et al.   Journal of Integrative Plant Biology

Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker-assisted selection of amylose content and paste viscosity

(2010) Ming-Hsuan Chen et al.   MOLECULAR BREEDING

Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A

(2010) Namrata Singh et al.   THEORETICAL AND APPLIED GENETICS

Important Sensory Properties Differentiating Premium Rice Varieties

(2010) Elaine T. Champagne et al.   Rice

Development of introgression lines of an Indica-type rice variety, IR64, for unique agronomic traits and detection of the responsible chromosomal regions

(2009) Daisuke Fujita et al.   FIELD CROPS RESEARCH

Identification of deletion mutants with improved performance under water-limited environments in rice (Oryza sativa L.)

(2009) J.E. Cairns et al.   FIELD CROPS RESEARCH

Four QTL in Rice Associated with Broad Spectrum Resistance to Blast Isolates from Rice and Barley

(2009) Phinyarat Kongprakhon et al.   JOURNAL OF PHYTOPATHOLOGY

Single Nucleotide Polymorphisms in a Gene for Translation Initiation Factor (eIF4G) of Rice (Oryza sativa) Associated with Resistance toRice tungro spherical virus

(2009) Jong-Hee Lee et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Development of elite indica rice lines with wide spectrum of resistance to Thai blast isolates by pyramiding multiple resistance QTLs

(2009) T. Sreewongchai et al.   PLANT BREEDING

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Recessive Mutation in Rice Conferring Non-Race-Specific Resistance to Bacterial Blight and Blast

(2009) Ma. Reina Suzette Madamba et al.   Rice

Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond

(2008) Endang M. Septiningsih et al.   ANNALS OF BOTANY

Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

(2007) B. C.Y Collard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES