Bacteria and fungi in day-old turkeys vary among companies, collection periods, and breeder flocks

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine

(2017) Nicole M. Vega et al.   PLOS BIOLOGY

Bacterial Succession in the Broiler Gastrointestinal Tract

(2016) Samir Ranjitkar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic bacterial community profiles of chicken embryo gastrointestinal tract by using T-RFLP analysis

(2016) L. A. Ilina et al.   Doklady Biochemistry and Biophysics

Eggshells as a source for occupational exposure to airborne bacteria in hatcheries

(2016) Paul Brauner et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE

Microbial community mapping in intestinal tract of broiler chicken

(2016) Yingping Xiao et al.   POULTRY SCIENCE

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines

(2015) Dirkjan Schokker et al.   BMC GENOMICS

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Xylo-oligosaccharides and virginiamycin differentially modulate gut microbial composition in chickens

(2015) Mohsen Pourabedin et al.   Microbiome

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Environmental Factors Shape the Community of Symbionts in the Hoopoe Uropygial Gland More than Genetic Factors

(2014) Magdalena Ruiz-Rodríguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Special structures of hoopoe eggshells enhance the adhesion of symbiont-carrying uropygial secretion that increase hatching success

(2014) Manuel Martín-Vivaldi et al.   JOURNAL OF ANIMAL ECOLOGY

Highly Variable Microbiota Development in the Chicken Gastrointestinal Tract

(2014) Dragana Stanley et al.   PLoS One

Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life

(2014) Petra Videnska et al.   PLoS One

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Succession of the turkey gastrointestinal bacterial microbiome related to weight gain

(2013) Jessica L. Danzeisen et al.   PeerJ

Intestinal microbiota associated with differential feed conversion efficiency in chickens

(2012) Dragana Stanley et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Differentiation of mixed lactic acid bacteria communities in beverage fermentations using targeted terminal restriction fragment length polymorphism

(2012) Nicholas A. Bokulich et al.   FOOD MICROBIOLOGY

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Influence of Antimicrobial Feed Additives on Broiler Commensal Posthatch Gut Microbiota Development and Performance

(2011) Valeria A. Torok et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

(2010) Bärbel Stecher et al.   PLoS Pathogens

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Exposure of different bacterial inocula to newborn chicken affects gut microbiota development and ileum gene expression

(2009) Yeshi Yin et al.   ISME Journal

Influence of different litter materials on cecal microbiota colonization in broiler chickens

(2009) V. A. Torok et al.   POULTRY SCIENCE

Field Evaluation of Maternal Antibody Transfer to a Group of Pathogens in Meat-Type Chickens

(2008) S. Gharaibeh et al.   POULTRY SCIENCE