Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size

Island biogeography of marine organisms

(2017) Hudson T. Pinheiro et al.   NATURE

Temperate marine protected area provides recruitment subsidies to local fisheries

(2017) A. Le Port et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes

(2017) Erwan Delrieu-Trottin et al.   Scientific Reports

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples

(2017) John Deck et al.   PLOS BIOLOGY

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia

(2017) Nicole L. Crane et al.   PLoS One

Genomic signatures of adaptive introgression from European mouflon into domestic sheep

(2017) Mario Barbato et al.   Scientific Reports

Continued decline in genetic diversity among wild cheetahs ( Acinonyx jubatus ) without further loss of semen quality

(2016) Kimberly A. Terrell et al.   BIOLOGICAL CONSERVATION

How and how much does RAD-seq bias genetic diversity estimates?

(2016) Marie Cariou et al.   BMC EVOLUTIONARY BIOLOGY

Sex change and effective population size: implications for population genetic studies in marine fish

(2016) I Coscia et al.   HEREDITY

Can estimates of genetic effective population size contribute to fisheries stock assessments?

(2016) J. R. Ovenden et al.   JOURNAL OF FISH BIOLOGY

Tiny estimates of theNe/Nratio in marine fishes: Are they real?

(2016) R. S. Waples   JOURNAL OF FISH BIOLOGY

Tempo and mode of speciation in Holacanthus angelfishes based on RADseq markers

(2016) Juliette Tariel et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coral reef fish assemblages at Clipperton Atoll (Eastern Tropical Pacific) and their relationship with coral cover

(2016) Aurora M. Ricart et al.   SCIENTIA MARINA

Genomic Inbreeding and Relatedness in Wild Panda Populations

(2016) John R. Garbe et al.   PLoS One

The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines

(2015) Brian L. Stockwell et al.   CONSERVATION GENETICS

Does population size affect genetic diversity? A test with sympatric lizard species

(2015) M T J Hague et al.   HEREDITY

Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes

(2015) Pablo Saenz-Agudelo et al.   MOLECULAR ECOLOGY

Development and preliminary evaluation of a genomewide single nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis)

(2015) Bai-Dong Zhang et al.   Molecular Ecology Resources

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data

(2015) Gary Longo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Exploring population size changes using SNP frequency spectra

(2015) Xiaoming Liu et al.   NATURE GENETICS

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Darwin's fishes: phylogeography of Galápagos Islands reef fishes

(2014) Giacomo Bernardi et al.   BULLETIN OF MARINE SCIENCE

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Genomic atolls of differentiation in coral reef fishes (Hypoplectrusspp.,Serranidae)

(2014) O. Puebla et al.   MOLECULAR ECOLOGY

Fishes of Clipperton Atoll, Eastern Pacific: Checklist, Endemism, and Analysis of Completeness of the Inventory

(2014) Manon Fourriére et al.   PACIFIC SCIENCE

Endemic and widespread coral reef fishes have similar mitochondrial genetic diversity

(2014) E. Delrieu-Trottin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Effective Population Size, Genetic Variation, and Their Relevance for Conservation: The Bighorn Sheep in Tiburon Island and Comparisons with Managed Artiodactyls

(2013) Jaime Gasca-Pineda et al.   PLoS One

Accounting for missing data in the estimation of contemporary genetic effective population size (Ne)

(2012) D. Peel et al.   Molecular Ecology Resources

Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network

(2012) Michael L. Berumen et al.   Ecology and Evolution

Small population size and extremely low levels of genetic diversity in island populations of the platypus,Ornithorhynchus anatinus

(2012) Elise Furlan et al.   Ecology and Evolution

Effective/census population size ratio estimation: a compendium and appraisal

(2012) Friso P. Palstra et al.   Ecology and Evolution

Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

(2011) Dennis Hedgecock et al.   BULLETIN OF MARINE SCIENCE

Understanding and Estimating Effective Population Size for Practical Application in Marine Species Management

(2011) MATTHEW P. HARE et al.   CONSERVATION BIOLOGY

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Herbivory, Connectivity, and Ecosystem Resilience: Response of a Coral Reef to a Large-Scale Perturbation

(2011) Thomas C. Adam et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae)

(2010) Yvette Alva-Campbell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Shore fishes and biogeographic subdivisions of the Tropical Eastern Pacific

(2009) DR Robertson et al.   MARINE ECOLOGY PROGRESS SERIES

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?

(2008) FRISO P. PALSTRA et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One