The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

Magnificent dimensions, varied forms, and brilliant colors: the molecular ecology and evolution of the Indian and Pacific oceans

(2014) Eric D Crandall et al.   BULLETIN OF MARINE SCIENCE

Basin isolation and oceanographic features influencing lineage divergence in the humbug damselfish (Dascyllus aruanus) in the Coral Triangle

(2014) JM Raynal et al.   BULLETIN OF MARINE SCIENCE

Marine Protected Areas in the Coral Triangle: Progress, Issues, and Options

(2014) Alan T. White et al.   COASTAL MANAGEMENT

Designing Marine Reserves for Fisheries Management, Biodiversity Conservation, and Climate Change Adaptation

(2014) Alison L. Green et al.   COASTAL MANAGEMENT

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

related: an R package for analysing pairwise relatedness from codominant molecular markers

(2014) Jack Pew et al.   Molecular Ecology Resources

Evaluating management performance of marine protected area networks in the Philippines

(2014) Vera Horigue et al.   OCEAN & COASTAL MANAGEMENT

Development and application of genomic tools to the restoration of green abalone in southern California

(2013) K. M. Gruenthal et al.   CONSERVATION GENETICS

Dispersal of Grouper Larvae Drives Local Resource Sharing in a Coral Reef Fishery

(2013) Glenn R. Almany et al.   CURRENT BIOLOGY

Pronounced genetic structure in a highly mobile coral reef fish, Caesio cuning, in the Coral Triangle

(2013) AS Ackiss et al.   MARINE ECOLOGY PROGRESS SERIES

Pervasive selection or is it…? why areFSToutliers sometimes so frequent?

(2013) Nicolas Bierne et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Global assessment of the status of coral reef herbivorous fishes: evidence for fishing effects

(2013) C. B. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Uninformative polymorphisms bias genome scans for signatures of selection

(2012) Marius Roesti et al.   BMC EVOLUTIONARY BIOLOGY

Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing

(2012) Meredith V Everett et al.   BMC GENOMICS

Larval Export from Marine Reserves and the Recruitment Benefit for Fish and Fisheries

(2012) Hugo B. Harrison et al.   CURRENT BIOLOGY

On the spatial scale of dispersal in coral reef fishes

(2012) O. Puebla et al.   MOLECULAR ECOLOGY

Accounting for missing data in the estimation of contemporary genetic effective population size (Ne)

(2012) D. Peel et al.   Molecular Ecology Resources

Commercial coral-reef fisheries across Micronesia: A need for improving management

(2011) P. Houk et al.   CORAL REEFS

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Regional Oceanography of the Philippine Archipelago

(2011) Arnold Gordon et al.   OCEANOGRAPHY

Local retention, dispersal and fluctuating connectivity among populations of a coral reef fish

(2011) J. Derek Hogan et al.   OECOLOGIA

Pelagic Larval Duration and Settlement Size of Apogonidae, Labridae, Scaridae, and Tripterygiidae Species in a Coral Lagoon of Okinawa Island, Southern Japan

(2011) Taiki Ishihara et al.   PACIFIC SCIENCE

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Genetic connectivity and historical demography of the blue barred parrotfish (Scarus ghobban) in the western Indian Ocean

(2010) Shakil Visram et al.   MARINE BIOLOGY

The West Pacific diversity hotspot as a source or sink for new species? Population genetic insights from the Indo-Pacific parrotfish Scarus rubroviolaceus

(2010) J. M. FITZPATRICK et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Placing marine protected areas onto the ecosystem-based management seascape

(2010) B. S. Halpern et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting larval export from marine reserves

(2010) R. A. Pelc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems

(2009) R. S. Steneck et al.   CORAL REEFS

Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges

(2009) G. P. Jones et al.   CORAL REEFS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Trophic and benthic responses to no-take marine reserve protection in the Philippines

(2009) B Stockwell et al.   MARINE ECOLOGY PROGRESS SERIES

A new method for estimating effective population sizes from a single sample of multilocus genotypes

(2009) JINLIANG WANG   MOLECULAR ECOLOGY

The influence of family groups on inferences made with the program Structure

(2009) E. C. ANDERSON et al.   Molecular Ecology Resources

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Seasonal surface ocean circulation and dynamics in the Philippine Archipelago region during 2004–2008

(2008) Weiqing Han et al.   DYNAMICS OF ATMOSPHERES AND OCEANS

Designing marine protected area networks to address the impacts of climate change

(2008) Elizabeth McLeod et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The influence of contrasting life history traits and oceanic processes on genetic structuring of rabbitfish populations Siganus argenteus and Siganus fuscescens along the eastern Philippine coasts

(2008) Richard M. Magsino et al.   MARINE BIOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources