Genome-wide analysis of codon usage bias in four sequenced cotton species

Codon usage pattern and prediction of gene expression level in Bungarus species

(2017) Supriyo Chakraborty et al.   GENE

Genome-wide comparative analysis of codon usage bias and codon context patterns among cyanobacterial genomes

(2017) Ratna Prabha et al.   Marine Genomics

A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae)

(2017) Joseph P. Gallagher et al.   SYSTEMATIC BOTANY

Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution

(2016) Yongchao Zhao et al.   BMC GENOMICS

Analysis of codon usage preference in hemagglutinin genes of the swine-origin influenza A (H1N1) virus

(2016) Sheng-Fan Wang et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

Codon Adaptation of Plastid Genes

(2016) Haruo Suzuki et al.   PLoS One

Genome-wide analysis of the synonymous codon usage patterns in apple

(2016) Ning LI et al.   Journal of Integrative Agriculture

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts

(2016) Hongju Wang et al.   PLoS One

Codon usage and codon context bias in Xanthophyllomyces dendrorhous

(2015) Marcelo Baeza et al.   BMC GENOMICS

Analysis of amino acid and codon usage inParamecium bursaria

(2015) Hideo Dohra et al.   FEBS LETTERS

Analysis of codon usage pattern evolution in avian rotaviruses and their preferred host

(2015) Jobin Jose Kattoor et al.   INFECTION GENETICS AND EVOLUTION

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

(2015) Xia Liu et al.   Scientific Reports

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

(2015) Daojun Yuan et al.   Scientific Reports

Codon usage bias of the phosphoprotein gene of spring viraemia of carp virus and high codon adaptation to the host

(2014) Yan-ping Ma et al.   ARCHIVES OF VIROLOGY

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

(2014) Hui Guo et al.   GENETICS

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

Parental origin and genomic evolution of tetraploidGossypiumspecies by molecular marker and GISH analyses

(2013) Wu Yu-xiang et al.   CARYOLOGIA

Transcriptome Sequencing and Differential Gene Expression Analysis of Delayed Gland Morphogenesis in Gossypium australe during Seed Germination

(2013) Tao Tao et al.   PLoS One

The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes

(2013) Guozheng Liu et al.   PLoS One

Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon

(2012) H. Liu et al.   GENETICS AND MOLECULAR RESEARCH

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Assessing the monophyly of polyploid Gossypium species

(2012) C. E. Grover et al.   PLANT SYSTEMATICS AND EVOLUTION

Comparative Analysis of Codon Usage Bias and Codon Context Patterns between Dipteran and Hymenopteran Sequenced Genomes

(2012) Susanta K. Behura et al.   PLoS One

Patterns and influencing factor of synonymous codon usage in porcine circovirus

(2012) Xin-sheng LIU et al.   Virology Journal

Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species

(2011) Suo Qiu et al.   Genome Biology and Evolution

Differential Trends in the Codon Usage Patterns in HIV-1 Genes

(2011) Aridaman Pandit et al.   PLoS One

Analysis of codon usage in Newcastle disease virus

(2011) Meng Wang et al.   VIRUS GENES

Codon usage bias is correlated with gene expression levels in the fission yeastSchizosaccharomyces pombe

(2009) Yasushi Hiraoka et al.   GENES TO CELLS

Analysis of synonymous codon usage in Zea mays

(2009) Hanmei Liu et al.   MOLECULAR BIOLOGY REPORTS

Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage

(2009) Yang Huang et al.   NUCLEIC ACIDS RESEARCH

An extensive analysis on the global codon usage pattern of baculoviruses

(2008) Yue Jiang et al.   ARCHIVES OF VIROLOGY

Nearly Neutrality and the Evolution of Codon Usage Bias in Eukaryotic Genomes

(2008) S. Subramanian   GENETICS