Analysis of amino acid and codon usage inParamecium bursaria

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

(2014) Y. Xie et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts

(2014) Yuuki Kodama et al.   BMC GENOMICS

Amino Acid Metabolism Conflicts with Protein Diversity

(2014) Teresa Krick et al.   MOLECULAR BIOLOGY AND EVOLUTION

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

The Effect of Multiple Evolutionary Selections on Synonymous Codon Usage of Genes in the Mycoplasma bovis Genome

(2014) Jian-hua Zhou et al.   PLoS One

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of de novo transcriptome assembly

(2013) Kaitlin Clarke et al.   Science China-Life Sciences

Morphological and Molecular Characterization ofParamecium(Viridoparameciumnov. subgen.)chlorelligerumKahl (Ciliophora)

(2012) Martin Kreutz et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift

(2011) P. Shah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic Ciliates Receive Protection Against UV Damage from their Algae: A Test with Paramecium bursaria and Chlorella

(2009) Monika Summerer et al.   PROTIST

Comparison of Correspondence Analysis Methods for Synonymous Codon Usage in Bacteria

(2008) H. Suzuki et al.   DNA RESEARCH

Patterns of Codon Usage in two Ciliates that Reassign the Genetic Code: Tetrahymena thermophila and Paramecium tetraurelia

(2008) Hannah M.W. Salim et al.   PROTIST