Unraveling lipid metabolism in maize with time-resolved multi-omics data

Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield

(2017) Rafael A. Cañas et al.   PLANT CELL

Expression of Camelina WRINKLED1 Isoforms Rescue the Seed Phenotype of the Arabidopsis wri1 Mutant and Increase the Triacylglycerol Content in Tobacco Leaves

(2017) Dahee An et al.   Frontiers in Plant Science

Screening of Candidate Leaf Morphology Genes by Integration of QTL Mapping and RNA Sequencing Technologies in Oilseed Rape (Brassica napus L.)

(2017) Hongju Jian et al.   PLoS One

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Identification of multiple lipid genes with modifications in expression and sequence associated with the evolution of hydroxy fatty acid accumulation inPhysaria fendleri

(2016) Patrick J. Horn et al.   PLANT JOURNAL

Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm

(2016) Chloé Guerin et al.   PLANT JOURNAL

Synthetic redesign of plant lipid metabolism

(2016) Richard P. Haslam et al.   PLANT JOURNAL

Integrating QTL mapping and transcriptomics identifies candidate genes underlying QTLs associated with soybean tolerance to low-phosphorus stress

(2016) Dan Zhang et al.   PLANT MOLECULAR BIOLOGY

Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals

(2016) Wei Chen et al.   Nature Communications

Learning from Co-expression Networks: Possibilities and Challenges

(2016) Elise A. R. Serin et al.   Frontiers in Plant Science

Genetic dissection of seed-iron and zinc concentrations in chickpea

(2016) Hari D. Upadhyaya et al.   Scientific Reports

Transcriptomic and metabolomic data integration

(2015) Rachel Cavill et al.   BRIEFINGS IN BIOINFORMATICS

Identification of regulatory network hubs that control lipid metabolism inChlamydomonas reinhardtii

(2015) Mahmoud Gargouri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional profiling of canola developing embryo and identification of the important roles ofBnDof5.6in embryo development and fatty acids synthesis

(2015) Wei Deng et al.   PLANT AND CELL PHYSIOLOGY

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

Role of B3 domain transcription factors of the AFL family in maize kernel filling

(2015) Aurélie Grimault et al.   PLANT SCIENCE

Characterisation of Lipid Changes in Ethylene-Promoted Senescence and Its Retardation by Suppression of Phospholipase Dδ in Arabidopsis Leaves

(2015) Yanxia Jia et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

PEX14 binding toArabidopsisPEX5 has differential effects on PTS1 and PTS2 cargo occupancy of the receptor

(2014) Thomas Lanyon-Hogg et al.   FEBS LETTERS

Linking Gene Expression and Membrane Lipid Composition ofArabidopsis

(2014) Jedrzej Szymanski et al.   PLANT CELL

Arabidopsisribosomal proteins control vacuole trafficking and developmental programs through the regulation of lipid metabolism

(2014) Ruixi Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth

(2014) G. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights

(2014) Weiwei Wen et al.   Nature Communications

Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)

(2013) Grégoire Le Provost et al.   BMC PLANT BIOLOGY

Altered Lipid Composition and Enhanced Nutritional Value of Arabidopsis Leaves following Introduction of an Algal Diacylglycerol Acyltransferase 2

(2013) Sanjaya et al.   PLANT CELL

WRINKLED1, A Ubiquitous Regulator in Oil Accumulating Tissues from Arabidopsis Embryos to Oil Palm Mesocarp

(2013) Wei Ma et al.   PLoS One

Towards revealing the functions of all genes in plants

(2013) Seung Yon Rhee et al.   TRENDS IN PLANT SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Sterols and sphingolipids differentially function in trafficking of the Arabidopsis ABCB19 auxin transporter

(2012) Haibing Yang et al.   PLANT JOURNAL

Arabidopsis thaliana mTERF proteins: evolution and functional classification

(2012) Tatjana Kleine   Frontiers in Plant Science

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Comparative deep transcriptional profiling of four developing oilseeds

(2011) Manuel A. Troncoso-Ponce et al.   PLANT JOURNAL

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

(2011) J. P. Cook et al.   PLANT PHYSIOLOGY

Duplicate Maize Wrinkled1 Transcription Factors Activate Target Genes Involved in Seed Oil Biosynthesis

(2011) B. Pouvreau et al.   PLANT PHYSIOLOGY

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Ultra Performance Liquid Chromatography and High Resolution Mass Spectrometry for the Analysis of Plant Lipids

(2011) Jan Hummel et al.   Frontiers in Plant Science

Lipidomics: New Tools and Applications

(2010) Markus R. Wenk   CELL

Physiological and developmental regulation of seed oil production

(2010) Sébastien Baud et al.   PROGRESS IN LIPID RESEARCH

A multivariate regression approach to association analysis of a quantitative trait network

(2009) S. Kim et al.   BIOINFORMATICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Tobacco as a production platform for biofuel: overexpression ofArabidopsis DGATandLEC2genes increases accumulation and shifts the composition of lipids in green biomass

(2009) Vyacheslav Andrianov et al.   PLANT BIOTECHNOLOGY JOURNAL

HISTONE MONOUBIQUITINATION1 Interacts with a Subunit of the Mediator Complex and Regulates Defense against Necrotrophic Fungal Pathogens in Arabidopsis

(2009) R. Dhawan et al.   PLANT CELL

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Characterization of genes in theASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES(AS2/LOB) family inArabidopsis thaliana, and functional and molecular comparisons betweenAS2and other family members

(2009) Yoko Matsumura et al.   PLANT JOURNAL

The targeting of the oxysterol-binding protein ORP3a to the endoplasmic reticulum relies on the plant VAP33 homolog PVA12

(2009) Ramu S. Saravanan et al.   PLANT JOURNAL

The Impact of Water Deficiency on Leaf Cuticle Lipids of Arabidopsis

(2009) D. K. Kosma et al.   PLANT PHYSIOLOGY

Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus

(2009) Jing Liu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Biosynthesis of oxylipins in non-mammals

(2009) Alexandra Andreou et al.   PROGRESS IN LIPID RESEARCH

Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism

(2008) Wieslawa I Mentzen et al.   BMC PLANT BIOLOGY

A phenylalanine in DGAT is a key determinant of oil content and composition in maize

(2008) Peizhong Zheng et al.   NATURE GENETICS

Gene Expression and Metabolism in Tomato Fruit Surface Tissues

(2008) S. Mintz-Oron et al.   PLANT PHYSIOLOGY

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

(2008) A. Yilmaz et al.   PLANT PHYSIOLOGY

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis

(2008) S. L. Stone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE