Hydrodynamics of Diffusion in Lipid Membrane Simulations

Diffusion under Confinement: Hydrodynamic Finite-Size Effects in Simulation

(2017) Pauline Simonnin et al.   Journal of Chemical Theory and Computation

Lipid and Peptide Diffusion in Bilayers: The Saffman–Delbrück Model and Periodic Boundary Conditions

(2017) Richard M. Venable et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Diffusion of Integral Membrane Proteins in Protein-Rich Membranes

(2017) Matti Javanainen et al.   Journal of Physical Chemistry Letters

Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes

(2017) Anna L. Duncan et al.   Scientific Reports

Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes

(2016) George Hedger et al.   BIOCHEMISTRY

Computational ‘microscopy’ of cellular membranes

(2016) Helgi I. Ingólfsson et al.   JOURNAL OF CELL SCIENCE

Membrane Compartmentalization Reducing the Mobility of Lipids and Proteins within a Model Plasma Membrane

(2016) Heidi Koldsø et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Divergent Diffusion Coefficients in Simulations of Fluids and Lipid Membranes

(2016) Martin Vögele et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes

(2015) Brian A. Camley et al.   JOURNAL OF CHEMICAL PHYSICS

Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations

(2015) Tsjerk A. Wassenaar et al.   Journal of Chemical Theory and Computation

Biomembranes in atomistic and coarse-grained simulations

(2015) Kristyna Pluhackova et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

(2015) Phillip J. Stansfeld et al.   STRUCTURE

CHARMM-GUIMembrane Buildertoward realistic biological membrane simulations

(2014) Emilia L. Wu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Lipid Organization of the Plasma Membrane

(2014) Helgi I. Ingólfsson et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Translational Diffusion in Lipid Membranes beyond the Saffman-Delbrück Approximation

(2008) Eugene P. Petrov et al.   BIOPHYSICAL JOURNAL

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation