Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes
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Title
Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes
Authors
Keywords
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Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-11-24
DOI
10.1038/s41598-017-16865-6
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Note: Only part of the references are listed.- Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations
- (2016) George Hedger et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Closing the gap: The approach of optical and computational microscopy to uncover biomembrane organization
- (2016) Christian Eggeling et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Effects of protein crowding on membrane systems
- (2016) Gernot Guigas et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Non-Brownian diffusion in lipid membranes: Experiments and simulations
- (2016) R. Metzler et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale
- (2016) Matthieu Chavent et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Computational ‘microscopy’ of cellular membranes
- (2016) Helgi I. Ingólfsson et al. JOURNAL OF CELL SCIENCE
- Structural basis of control of inward rectifier Kir2 channel gating by bulk anionic phospholipids
- (2016) Sun-Joo Lee et al. JOURNAL OF GENERAL PHYSIOLOGY
- Ganglioside-Lipid and Ganglioside-Protein Interactions Revealed by Coarse-Grained and Atomistic Molecular Dynamics Simulations
- (2016) Ruo-Xu Gu et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Membrane Compartmentalization Reducing the Mobility of Lipids and Proteins within a Model Plasma Membrane
- (2016) Heidi Koldsø et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Divergent Diffusion Coefficients in Simulations of Fluids and Lipid Membranes
- (2016) Martin Vögele et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Convergence and Sampling in Determining Free Energy Landscapes for Membrane Protein Association
- (2016) Jan Domański et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Free Energy Landscape of Lipid Interactions with Regulatory Binding Sites on the Transmembrane Domain of the EGF Receptor
- (2016) George Hedger et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Roles of Interleaflet Coupling and Hydrophobic Mismatch in Lipid Membrane Phase-Separation Kinetics
- (2016) Philip W. Fowler et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations
- (2016) Mickaël Lelimousin et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Effect of charge on the mechanical properties of surfactant bilayers
- (2016) Robert Bradbury et al. Soft Matter
- The impact of physiological crowding on the diffusivity of membrane bound proteins
- (2016) Justin R. Houser et al. Soft Matter
- Membrane stiffness is modified by integral membrane proteins
- (2016) Philip W. Fowler et al. Soft Matter
- Short-Lived Cages Restrict Protein Diffusion in the Plasma Membrane
- (2016) Maria Goiko et al. Scientific Reports
- Protein assemblies of sodium and inward rectifier potassium channels control cardiac excitability and arrhythmogenesis
- (2015) B. Cicero Willis et al. AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY
- Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations
- (2015) Floris J. van Eerden et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- The influence of cholesterol on membrane protein structure, function, and dynamics studied by molecular dynamics simulations
- (2015) Julie Grouleff et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Lipid agonism: The PIP2 paradigm of ligand-gated ion channels
- (2015) Scott B. Hansen BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS
- Mechanisms of sodium channel clustering and its influence on axonal impulse conduction
- (2015) Sean A. Freeman et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Competing Lipid-Protein and Protein-Protein Interactions Determine Clustering and Gating Patterns in the Potassium Channel fromStreptomyces lividans(KcsA)
- (2015) M. Luisa Molina et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes
- (2015) Brian A. Camley et al. JOURNAL OF CHEMICAL PHYSICS
- Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
- (2015) Tsjerk A. Wassenaar et al. Journal of Chemical Theory and Computation
- Organization and Dynamics of Receptor Proteins in a Plasma Membrane
- (2015) Heidi Koldsø et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria
- (2015) Patrice Rassam et al. NATURE
- Nothing to Sneeze At: A Dynamic and Integrative Computational Model of an Influenza A Virion
- (2015) Tyler Reddy et al. STRUCTURE
- MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes
- (2015) Phillip J. Stansfeld et al. STRUCTURE
- Identification of a Cholesterol-Binding Pocket in Inward Rectifier K + (Kir) Channels
- (2014) Oliver Fürst et al. BIOPHYSICAL JOURNAL
- Nanoclustering as a dominant feature of plasma membrane organization
- (2014) M. F. Garcia-Parajo et al. JOURNAL OF CELL SCIENCE
- Membrane proteins bind lipids selectively to modulate their structure and function
- (2014) Arthur Laganowsky et al. NATURE
- A sub-nanometre view of how membrane curvature and composition modulate lipid packing and protein recruitment
- (2014) Stefano Vanni et al. Nature Communications
- Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex
- (2013) Sanja Pöyry et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Non-covalent binding of membrane lipids to membrane proteins
- (2013) Philip L. Yeagle BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Lateral Membrane Diffusion Modulated by a Minimal Actin Cortex
- (2013) Fabian Heinemann et al. BIOPHYSICAL JOURNAL
- Perspective on the Martini model
- (2013) Siewert J. Marrink et al. CHEMICAL SOCIETY REVIEWS
- Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers
- (2013) Norberto Castillo et al. CHEMISTRY AND PHYSICS OF LIPIDS
- Energetics and Location of Phosphoinositide Binding in Human Kir2.1 Channels
- (2013) Nazzareno D'Avanzo et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Identification of Novel Cholesterol-binding Regions in Kir2 Channels
- (2013) Avia Rosenhouse-Dantsker et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Biological functions of sphingomyelins
- (2013) J. Peter Slotte PROGRESS IN LIPID RESEARCH
- Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes
- (2013) Joseph E. Goose et al. PLoS Computational Biology
- Simulation-Based Prediction of Phosphatidylinositol 4,5-Bisphosphate Binding to an Ion Channel
- (2012) Matthias R. Schmidt et al. BIOCHEMISTRY
- Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes
- (2012) Matti Javanainen et al. FARADAY DISCUSSIONS
- Improved Parameters for the Martini Coarse-Grained Protein Force Field
- (2012) Djurre H. de Jong et al. Journal of Chemical Theory and Computation
- Structural Determinants of the Supramolecular Organization of G Protein-Coupled Receptors in Bilayers
- (2012) Xavier Periole et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Anomalous Diffusion of Phospholipids and Cholesterols in a Lipid Bilayer and its Origins
- (2012) Jae-Hyung Jeon et al. PHYSICAL REVIEW LETTERS
- Self-directed assembly and clustering of the cytoplasmic domains of inwardly rectifying Kir2.1 potassium channels on association with PSD-95
- (2011) Svetlana Fomina et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Dual-Mode Phospholipid Regulation of Human Inward Rectifying Potassium Channels
- (2011) Wayland W.L. Cheng et al. BIOPHYSICAL JOURNAL
- Bilayer-Mediated Clustering and Functional Interaction of MscL Channels
- (2011) Stephan L. Grage et al. BIOPHYSICAL JOURNAL
- The NumPy Array: A Structure for Efficient Numerical Computation
- (2011) Stéfan van der Walt et al. COMPUTING IN SCIENCE & ENGINEERING
- MDAnalysis: A toolkit for the analysis of molecular dynamics simulations
- (2011) Naveen Michaud-Agrawal et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2
- (2011) Scott B. Hansen et al. NATURE
- Enantioselective Protein-Sterol Interactions Mediate Regulation of Both Prokaryotic and Eukaryotic Inward Rectifier K+ Channels by Cholesterol
- (2011) Nazzareno D'Avanzo et al. PLoS One
- Cell Membranes: The Lipid Perspective
- (2011) Ünal Coskun et al. STRUCTURE
- Hierarchical mesoscale domain organization of the plasma membrane
- (2011) Akihiro Kusumi et al. TRENDS IN BIOCHEMICAL SCIENCES
- Biological membranes: the importance of molecular detail
- (2011) Anthony G. Lee TRENDS IN BIOCHEMICAL SCIENCES
- Lipid map of the mammalian cell
- (2010) G. van Meer et al. JOURNAL OF CELL SCIENCE
- Membrane Proteins Diffuse as Dynamic Complexes with Lipids
- (2010) Perttu S. Niemelä et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes
- (2010) Durba Sengupta et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Inwardly Rectifying Potassium Channels: Their Structure, Function, and Physiological Roles
- (2010) Hiroshi Hibino et al. PHYSIOLOGICAL REVIEWS
- Lipid Rafts As a Membrane-Organizing Principle
- (2010) D. Lingwood et al. SCIENCE
- Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition
- (2009) Xavier Periole et al. Journal of Chemical Theory and Computation
- Mutations in the K+-Channel KcsA Toward Kir Channels Alter Salt-Induced Clusterization and Blockade by Quaternary Alkylammonium Ions
- (2009) Mobeen Raja et al. JOURNAL OF MEMBRANE BIOLOGY
- Lateral Diffusion of Membrane Proteins
- (2009) Sivaramakrishnan Ramadurai et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- PIP2 Is a Necessary Cofactor for Ion Channel Function: How and Why?
- (2008) Byung-Chang Suh et al. Annual Review of Biophysics
- Elastic Modeling of Biomembranes and Lipid Bilayers
- (2008) Frank L.H. Brown Annual Review of Physical Chemistry
- The MARTINI Coarse-Grained Force Field: Extension to Proteins
- (2008) Luca Monticelli et al. Journal of Chemical Theory and Computation
- Membrane lipids: where they are and how they behave
- (2008) Gerrit van Meer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Protein area occupancy at the center of the red blood cell membrane
- (2008) A. D. Dupuy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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