CHARMM-GUIMembrane Buildertoward realistic biological membrane simulations

Probing the U-Shaped Conformation of Caveolin-1 in a Bilayer

(2014) Huan Rui et al.   BIOPHYSICAL JOURNAL

ST-analyzer: A web-based user interface for simulation trajectory analysis

(2014) Jong Cheol Jeong et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Preferred Orientations of Phosphoinositides in Bilayers and Their Implications in Protein Recognition Mechanisms

(2014) Emilia L. Wu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

NMR-Based Simulation Studies of Pf1 Coat Protein in Explicit Membranes

(2013) Xi Cheng et al.   BIOPHYSICAL JOURNAL

Molecular Dynamics and NMR Spectroscopy Studies of E. coli Lipopolysaccharide Structure and Dynamics

(2013) Emilia L. Wu et al.   BIOPHYSICAL JOURNAL

Architecture and Membrane Interactions of the EGF Receptor

(2013) Anton Arkhipov et al.   CELL

Membrane models of E. coli containing cyclic moieties in the aliphatic lipid chain

(2012) Kunal R. Pandit et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

ERGOSTEROL BIOSYNTHESIS: A FUNGAL PATHWAY FOR LIFE ON LAND?

(2012) Sebastien Dupont et al.   EVOLUTION

LAMBADA and InflateGRO2: Efficient Membrane Alignment and Insertion of Membrane Proteins for Molecular Dynamics Simulations

(2012) Thomas H. Schmidt et al.   Journal of Chemical Information and Modeling

Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force Field

(2012) Daniel Aguayo et al.   Journal of Chemical Theory and Computation

Precursor or Charge Supplier?

(2012) G. D. Fairn et al.   SCIENCE

Finding a Needle in a Haystack: The Role of Electrostatics in Target Lipid Recognition by PH Domains

(2012) Craig N. Lumb et al.   PLoS Computational Biology

Lipid chain branching at the iso- and anteiso-positions in complex chlamydia membranes: A molecular dynamics study

(2010) Joseph B. Lim et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation

(2010) Maarten G. Wolf et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Probing the Periplasmic-Open State of Lactose Permease in Response to Sugar Binding and Proton Translocation

(2010) Pushkar Y. Pendse et al.   JOURNAL OF MOLECULAR BIOLOGY

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Translation of the phosphoinositide code by PI effectors

(2010) Tatiana G Kutateladze   Nature Chemical Biology

Requirement for Ergosterol in V-ATPase Function Underlies Antifungal Activity of Azole Drugs

(2010) Yong-Qiang Zhang et al.   PLoS Pathogens

Cardiolipin and the osmotic stress responses of bacteria

(2009) Tatyana Romantsov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

(2009) Sunhwan Jo et al.   BIOPHYSICAL JOURNAL

CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses

(2009) Olgun Guvench et al.   Journal of Chemical Theory and Computation

PACKMOL: A package for building initial configurations for molecular dynamics simulations

(2009) L. Martínez et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

CHARMM Additive All-Atom Force Field for Aldopentofuranoses, Methyl-aldopentofuranosides, and Fructofuranose

(2009) Elizabeth Hatcher et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Mitochondrial Membranes with Mono- and Divalent Salt: Changes Induced by Salt Ions on Structure and Dynamics

(2009) Sanja Pöyry et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Additive empirical force field for hexopyranose monosaccharides

(2008) Olgun Guvench et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY